Amino acid dipepetide frequency for Macroptilium yellow mosaic virus-[Cuba]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.326AlaAla: 2.326 ± 1.634
1.163AlaCys: 1.163 ± 0.939
0.0AlaAsp: 0.0 ± 0.0
2.326AlaGlu: 2.326 ± 1.313
1.163AlaPhe: 1.163 ± 1.523
2.326AlaGly: 2.326 ± 1.877
2.326AlaHis: 2.326 ± 1.313
1.163AlaIle: 1.163 ± 1.274
4.651AlaLys: 4.651 ± 2.392
9.302AlaLeu: 9.302 ± 2.996
0.0AlaMet: 0.0 ± 0.0
2.326AlaAsn: 2.326 ± 1.313
2.326AlaPro: 2.326 ± 0.834
1.163AlaGln: 1.163 ± 0.817
4.651AlaArg: 4.651 ± 3.269
6.977AlaSer: 6.977 ± 0.581
3.488AlaThr: 3.488 ± 2.192
1.163AlaVal: 1.163 ± 1.523
2.326AlaTrp: 2.326 ± 0.834
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.163CysAla: 1.163 ± 1.274
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
2.326CysGlu: 2.326 ± 0.834
0.0CysPhe: 0.0 ± 0.0
1.163CysGly: 1.163 ± 1.274
1.163CysHis: 1.163 ± 1.274
1.163CysIle: 1.163 ± 0.939
2.326CysLys: 2.326 ± 0.834
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.163CysAsn: 1.163 ± 0.817
0.0CysPro: 0.0 ± 0.0
1.163CysGln: 1.163 ± 0.817
0.0CysArg: 0.0 ± 0.0
2.326CysSer: 2.326 ± 1.286
2.326CysThr: 2.326 ± 0.834
1.163CysVal: 1.163 ± 0.939
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.163AspAla: 1.163 ± 0.939
0.0AspCys: 0.0 ± 0.0
4.651AspAsp: 4.651 ± 2.572
1.163AspGlu: 1.163 ± 0.939
4.651AspPhe: 4.651 ± 2.081
3.488AspGly: 3.488 ± 2.452
2.326AspHis: 2.326 ± 2.548
5.814AspIle: 5.814 ± 2.326
3.488AspLys: 3.488 ± 1.569
4.651AspLeu: 4.651 ± 2.183
0.0AspMet: 0.0 ± 0.0
1.163AspAsn: 1.163 ± 0.939
1.163AspPro: 1.163 ± 1.523
1.163AspGln: 1.163 ± 1.523
2.326AspArg: 2.326 ± 1.877
5.814AspSer: 5.814 ± 0.703
0.0AspThr: 0.0 ± 0.0
2.326AspVal: 2.326 ± 0.834
1.163AspTrp: 1.163 ± 0.817
1.163AspTyr: 1.163 ± 0.817
0.0AspXaa: 0.0 ± 0.0
Glu
2.326GluAla: 2.326 ± 0.834
0.0GluCys: 0.0 ± 0.0
2.326GluAsp: 2.326 ± 1.313
4.651GluGlu: 4.651 ± 3.269
2.326GluPhe: 2.326 ± 1.286
4.651GluGly: 4.651 ± 2.081
1.163GluHis: 1.163 ± 1.274
1.163GluIle: 1.163 ± 1.523
0.0GluLys: 0.0 ± 0.0
2.326GluLeu: 2.326 ± 1.634
1.163GluMet: 1.163 ± 0.817
8.14GluAsn: 8.14 ± 4.295
2.326GluPro: 2.326 ± 0.834
4.651GluGln: 4.651 ± 1.668
3.488GluArg: 3.488 ± 1.738
0.0GluSer: 0.0 ± 0.0
0.0GluThr: 0.0 ± 0.0
2.326GluVal: 2.326 ± 1.313
1.163GluTrp: 1.163 ± 0.817
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.326PheAla: 2.326 ± 1.313
1.163PheCys: 1.163 ± 0.939
2.326PheAsp: 2.326 ± 0.834
1.163PheGlu: 1.163 ± 0.817
1.163PhePhe: 1.163 ± 1.523
2.326PheGly: 2.326 ± 0.834
3.488PheHis: 3.488 ± 1.359
3.488PheIle: 3.488 ± 1.569
3.488PheLys: 3.488 ± 3.18
4.651PheLeu: 4.651 ± 2.392
0.0PheMet: 0.0 ± 0.0
3.488PheAsn: 3.488 ± 1.11
0.0PhePro: 0.0 ± 0.0
4.651PheGln: 4.651 ± 1.117
3.488PheArg: 3.488 ± 1.521
1.163PheSer: 1.163 ± 0.939
2.326PheThr: 2.326 ± 1.884
1.163PheVal: 1.163 ± 0.817
3.488PheTrp: 3.488 ± 2.0
3.488PheTyr: 3.488 ± 1.826
0.0PheXaa: 0.0 ± 0.0
Gly
4.651GlyAla: 4.651 ± 3.269
3.488GlyCys: 3.488 ± 1.052
1.163GlyAsp: 1.163 ± 0.817
5.814GlyGlu: 5.814 ± 2.369
1.163GlyPhe: 1.163 ± 1.274
6.977GlyGly: 6.977 ± 3.303
1.163GlyHis: 1.163 ± 0.817
3.488GlyIle: 3.488 ± 1.11
9.302GlyLys: 9.302 ± 2.513
4.651GlyLeu: 4.651 ± 4.495
0.0GlyMet: 0.0 ± 0.0
2.326GlyAsn: 2.326 ± 1.877
2.326GlyPro: 2.326 ± 0.834
4.651GlyGln: 4.651 ± 2.457
3.488GlyArg: 3.488 ± 1.738
4.651GlySer: 4.651 ± 3.711
3.488GlyThr: 3.488 ± 2.192
1.163GlyVal: 1.163 ± 0.817
0.0GlyTrp: 0.0 ± 0.0
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.326HisAla: 2.326 ± 1.39
2.326HisCys: 2.326 ± 1.286
2.326HisAsp: 2.326 ± 1.39
2.326HisGlu: 2.326 ± 1.313
1.163HisPhe: 1.163 ± 0.817
2.326HisGly: 2.326 ± 2.548
2.326HisHis: 2.326 ± 2.548
2.326HisIle: 2.326 ± 1.884
1.163HisLys: 1.163 ± 1.523
3.488HisLeu: 3.488 ± 2.452
0.0HisMet: 0.0 ± 0.0
5.814HisAsn: 5.814 ± 2.819
4.651HisPro: 4.651 ± 3.655
2.326HisGln: 2.326 ± 1.638
4.651HisArg: 4.651 ± 2.779
1.163HisSer: 1.163 ± 0.939
2.326HisThr: 2.326 ± 1.877
3.488HisVal: 3.488 ± 1.577
1.163HisTrp: 1.163 ± 0.817
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
1.163IleCys: 1.163 ± 0.817
1.163IleAsp: 1.163 ± 0.817
0.0IleGlu: 0.0 ± 0.0
4.651IlePhe: 4.651 ± 2.183
2.326IleGly: 2.326 ± 1.313
2.326IleHis: 2.326 ± 1.286
2.326IleIle: 2.326 ± 1.313
4.651IleLys: 4.651 ± 1.117
2.326IleLeu: 2.326 ± 0.834
1.163IleMet: 1.163 ± 1.523
3.488IleAsn: 3.488 ± 2.832
1.163IlePro: 1.163 ± 0.817
2.326IleGln: 2.326 ± 1.313
5.814IleArg: 5.814 ± 0.703
5.814IleSer: 5.814 ± 2.101
5.814IleThr: 5.814 ± 2.352
2.326IleVal: 2.326 ± 1.634
2.326IleTrp: 2.326 ± 1.638
4.651IleTyr: 4.651 ± 1.582
0.0IleXaa: 0.0 ± 0.0
Lys
4.651LysAla: 4.651 ± 1.553
0.0LysCys: 0.0 ± 0.0
5.814LysAsp: 5.814 ± 3.124
4.651LysGlu: 4.651 ± 3.269
4.651LysPhe: 4.651 ± 2.626
3.488LysGly: 3.488 ± 1.11
1.163LysHis: 1.163 ± 0.817
3.488LysIle: 3.488 ± 2.192
1.163LysLys: 1.163 ± 0.817
2.326LysLeu: 2.326 ± 0.834
1.163LysMet: 1.163 ± 1.066
4.651LysAsn: 4.651 ± 2.799
2.326LysPro: 2.326 ± 0.834
0.0LysGln: 0.0 ± 0.0
3.488LysArg: 3.488 ± 1.577
6.977LysSer: 6.977 ± 0.581
1.163LysThr: 1.163 ± 0.817
5.814LysVal: 5.814 ± 4.694
0.0LysTrp: 0.0 ± 0.0
2.326LysTyr: 2.326 ± 0.834
0.0LysXaa: 0.0 ± 0.0
Leu
0.0LeuAla: 0.0 ± 0.0
1.163LeuCys: 1.163 ± 0.817
6.977LeuAsp: 6.977 ± 2.532
2.326LeuGlu: 2.326 ± 1.313
3.488LeuPhe: 3.488 ± 1.738
5.814LeuGly: 5.814 ± 1.394
6.977LeuHis: 6.977 ± 2.532
2.326LeuIle: 2.326 ± 1.634
5.814LeuLys: 5.814 ± 2.101
4.651LeuLeu: 4.651 ± 1.525
1.163LeuMet: 1.163 ± 0.939
4.651LeuAsn: 4.651 ± 1.553
2.326LeuPro: 2.326 ± 2.548
4.651LeuGln: 4.651 ± 2.392
1.163LeuArg: 1.163 ± 0.939
4.651LeuSer: 4.651 ± 3.269
3.488LeuThr: 3.488 ± 1.569
5.814LeuVal: 5.814 ± 2.676
0.0LeuTrp: 0.0 ± 0.0
5.814LeuTyr: 5.814 ± 2.242
0.0LeuXaa: 0.0 ± 0.0
Met
2.326MetAla: 2.326 ± 1.877
1.163MetCys: 1.163 ± 0.939
2.326MetAsp: 2.326 ± 1.877
0.0MetGlu: 0.0 ± 0.0
1.163MetPhe: 1.163 ± 0.939
0.0MetGly: 0.0 ± 0.0
1.163MetHis: 1.163 ± 0.939
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
0.0MetLeu: 0.0 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
2.326MetPro: 2.326 ± 0.834
1.163MetGln: 1.163 ± 0.817
1.163MetArg: 1.163 ± 1.274
0.0MetSer: 0.0 ± 0.0
1.163MetThr: 1.163 ± 1.523
1.163MetVal: 1.163 ± 1.523
1.163MetTrp: 1.163 ± 0.817
2.326MetTyr: 2.326 ± 1.877
0.0MetXaa: 0.0 ± 0.0
Asn
4.651AsnAla: 4.651 ± 1.668
3.488AsnCys: 3.488 ± 2.426
3.488AsnAsp: 3.488 ± 1.052
3.488AsnGlu: 3.488 ± 1.577
2.326AsnPhe: 2.326 ± 1.638
1.163AsnGly: 1.163 ± 0.939
6.977AsnHis: 6.977 ± 3.11
4.651AsnIle: 4.651 ± 1.057
3.488AsnLys: 3.488 ± 1.052
1.163AsnLeu: 1.163 ± 0.817
1.163AsnMet: 1.163 ± 1.693
4.651AsnAsn: 4.651 ± 1.057
3.488AsnPro: 3.488 ± 1.11
0.0AsnGln: 0.0 ± 0.0
5.814AsnArg: 5.814 ± 0.703
3.488AsnSer: 3.488 ± 1.11
0.0AsnThr: 0.0 ± 0.0
5.814AsnVal: 5.814 ± 2.775
1.163AsnTrp: 1.163 ± 0.817
4.651AsnTyr: 4.651 ± 2.13
0.0AsnXaa: 0.0 ± 0.0
Pro
1.163ProAla: 1.163 ± 0.817
1.163ProCys: 1.163 ± 0.939
0.0ProAsp: 0.0 ± 0.0
2.326ProGlu: 2.326 ± 1.634
2.326ProPhe: 2.326 ± 1.313
1.163ProGly: 1.163 ± 0.817
4.651ProHis: 4.651 ± 2.392
1.163ProIle: 1.163 ± 0.817
5.814ProLys: 5.814 ± 2.341
3.488ProLeu: 3.488 ± 1.521
3.488ProMet: 3.488 ± 1.624
4.651ProAsn: 4.651 ± 1.553
5.814ProPro: 5.814 ± 1.962
2.326ProGln: 2.326 ± 2.548
1.163ProArg: 1.163 ± 0.939
8.14ProSer: 8.14 ± 4.519
1.163ProThr: 1.163 ± 0.817
2.326ProVal: 2.326 ± 0.834
2.326ProTrp: 2.326 ± 0.834
1.163ProTyr: 1.163 ± 0.939
0.0ProXaa: 0.0 ± 0.0
Gln
4.651GlnAla: 4.651 ± 1.057
0.0GlnCys: 0.0 ± 0.0
1.163GlnAsp: 1.163 ± 1.274
1.163GlnGlu: 1.163 ± 0.939
1.163GlnPhe: 1.163 ± 0.817
2.326GlnGly: 2.326 ± 0.834
0.0GlnHis: 0.0 ± 0.0
3.488GlnIle: 3.488 ± 1.569
1.163GlnLys: 1.163 ± 0.817
3.488GlnLeu: 3.488 ± 1.521
0.0GlnMet: 0.0 ± 0.0
2.326GlnAsn: 2.326 ± 1.634
3.488GlnPro: 3.488 ± 1.738
0.0GlnGln: 0.0 ± 0.0
2.326GlnArg: 2.326 ± 1.39
6.977GlnSer: 6.977 ± 2.419
1.163GlnThr: 1.163 ± 1.523
5.814GlnVal: 5.814 ± 2.676
0.0GlnTrp: 0.0 ± 0.0
1.163GlnTyr: 1.163 ± 0.939
0.0GlnXaa: 0.0 ± 0.0
Arg
4.651ArgAla: 4.651 ± 2.759
0.0ArgCys: 0.0 ± 0.0
3.488ArgAsp: 3.488 ± 2.816
1.163ArgGlu: 1.163 ± 1.274
9.302ArgPhe: 9.302 ± 3.442
5.814ArgGly: 5.814 ± 2.154
2.326ArgHis: 2.326 ± 1.39
6.977ArgIle: 6.977 ± 1.378
1.163ArgLys: 1.163 ± 0.939
3.488ArgLeu: 3.488 ± 1.052
1.163ArgMet: 1.163 ± 0.939
1.163ArgAsn: 1.163 ± 0.817
4.651ArgPro: 4.651 ± 1.668
0.0ArgGln: 0.0 ± 0.0
5.814ArgArg: 5.814 ± 3.833
8.14ArgSer: 8.14 ± 2.304
2.326ArgThr: 2.326 ± 1.313
3.488ArgVal: 3.488 ± 1.052
0.0ArgTrp: 0.0 ± 0.0
1.163ArgTyr: 1.163 ± 1.523
0.0ArgXaa: 0.0 ± 0.0
Ser
4.651SerAla: 4.651 ± 3.269
0.0SerCys: 0.0 ± 0.0
3.488SerAsp: 3.488 ± 1.577
0.0SerGlu: 0.0 ± 0.0
1.163SerPhe: 1.163 ± 1.274
5.814SerGly: 5.814 ± 1.394
3.488SerHis: 3.488 ± 2.0
5.814SerIle: 5.814 ± 2.154
4.651SerLys: 4.651 ± 1.525
5.814SerLeu: 5.814 ± 2.946
0.0SerMet: 0.0 ± 0.0
6.977SerAsn: 6.977 ± 2.502
8.14SerPro: 8.14 ± 3.388
3.488SerGln: 3.488 ± 2.426
4.651SerArg: 4.651 ± 2.13
8.14SerSer: 8.14 ± 2.898
4.651SerThr: 4.651 ± 1.273
4.651SerVal: 4.651 ± 1.582
0.0SerTrp: 0.0 ± 0.0
5.814SerTyr: 5.814 ± 1.529
0.0SerXaa: 0.0 ± 0.0
Thr
3.488ThrAla: 3.488 ± 3.021
0.0ThrCys: 0.0 ± 0.0
2.326ThrAsp: 2.326 ± 3.047
1.163ThrGlu: 1.163 ± 0.939
0.0ThrPhe: 0.0 ± 0.0
3.488ThrGly: 3.488 ± 1.11
3.488ThrHis: 3.488 ± 2.0
2.326ThrIle: 2.326 ± 1.286
0.0ThrLys: 0.0 ± 0.0
3.488ThrLeu: 3.488 ± 1.11
1.163ThrMet: 1.163 ± 0.817
4.651ThrAsn: 4.651 ± 1.668
3.488ThrPro: 3.488 ± 1.359
1.163ThrGln: 1.163 ± 1.523
3.488ThrArg: 3.488 ± 2.192
2.326ThrSer: 2.326 ± 0.834
4.651ThrThr: 4.651 ± 6.094
2.326ThrVal: 2.326 ± 0.834
0.0ThrTrp: 0.0 ± 0.0
2.326ThrTyr: 2.326 ± 1.313
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
1.163ValCys: 1.163 ± 0.817
2.326ValAsp: 2.326 ± 1.634
4.651ValGlu: 4.651 ± 2.13
2.326ValPhe: 2.326 ± 1.638
5.814ValGly: 5.814 ± 3.227
0.0ValHis: 0.0 ± 0.0
3.488ValIle: 3.488 ± 1.11
3.488ValLys: 3.488 ± 1.577
4.651ValLeu: 4.651 ± 2.13
2.326ValMet: 2.326 ± 1.877
3.488ValAsn: 3.488 ± 2.192
4.651ValPro: 4.651 ± 1.057
4.651ValGln: 4.651 ± 1.057
4.651ValArg: 4.651 ± 3.275
2.326ValSer: 2.326 ± 1.634
3.488ValThr: 3.488 ± 1.577
1.163ValVal: 1.163 ± 0.939
1.163ValTrp: 1.163 ± 1.523
3.488ValTyr: 3.488 ± 2.816
0.0ValXaa: 0.0 ± 0.0
Trp
1.163TrpAla: 1.163 ± 0.817
0.0TrpCys: 0.0 ± 0.0
1.163TrpAsp: 1.163 ± 1.274
1.163TrpGlu: 1.163 ± 1.523
0.0TrpPhe: 0.0 ± 0.0
1.163TrpGly: 1.163 ± 0.817
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
2.326TrpLys: 2.326 ± 0.834
1.163TrpLeu: 1.163 ± 0.939
1.163TrpMet: 1.163 ± 0.939
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
1.163TrpGln: 1.163 ± 0.817
1.163TrpArg: 1.163 ± 0.939
0.0TrpSer: 0.0 ± 0.0
2.326TrpThr: 2.326 ± 1.313
3.488TrpVal: 3.488 ± 1.359
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.488TyrAla: 3.488 ± 1.577
0.0TyrCys: 0.0 ± 0.0
1.163TyrAsp: 1.163 ± 0.939
2.326TyrGlu: 2.326 ± 1.877
4.651TyrPhe: 4.651 ± 1.057
2.326TyrGly: 2.326 ± 0.834
1.163TyrHis: 1.163 ± 1.523
1.163TyrIle: 1.163 ± 0.939
1.163TyrLys: 1.163 ± 0.817
8.14TyrLeu: 8.14 ± 3.746
2.326TyrMet: 2.326 ± 1.435
1.163TyrAsn: 1.163 ± 0.817
1.163TyrPro: 1.163 ± 0.817
1.163TyrGln: 1.163 ± 0.817
3.488TyrArg: 3.488 ± 2.816
2.326TyrSer: 2.326 ± 0.834
0.0TyrThr: 0.0 ± 0.0
2.326TyrVal: 2.326 ± 3.047
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (861 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski