Petrimonas mucosa

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Petrimonas

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2896 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G4G9B4|A0A1G4G9B4_9BACT N-glycanase_N domain-containing protein OS=Petrimonas mucosa OX=1642646 GN=ING2E5A_2344 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 9.36ITDD5 pKa = 3.74SKK7 pKa = 11.42YY8 pKa = 9.03VTLTYY13 pKa = 10.76DD14 pKa = 3.63LNVGEE19 pKa = 4.25GDD21 pKa = 3.32EE22 pKa = 4.46RR23 pKa = 11.84EE24 pKa = 4.44LMEE27 pKa = 4.0QATPEE32 pKa = 4.1RR33 pKa = 11.84PLEE36 pKa = 4.37FIFGTNSMLKK46 pKa = 10.27AFEE49 pKa = 4.6DD50 pKa = 3.83NIYY53 pKa = 10.7GLSEE57 pKa = 3.94GDD59 pKa = 3.48SFKK62 pKa = 11.08FSLTPDD68 pKa = 3.51EE69 pKa = 5.54AYY71 pKa = 10.71GDD73 pKa = 3.83YY74 pKa = 11.19DD75 pKa = 3.42EE76 pKa = 5.25TRR78 pKa = 11.84IIDD81 pKa = 3.69LPKK84 pKa = 10.69SIFEE88 pKa = 3.96VDD90 pKa = 3.23GKK92 pKa = 10.39IDD94 pKa = 3.46HH95 pKa = 6.57QMLFEE100 pKa = 5.11GNTLPMMDD108 pKa = 3.56SDD110 pKa = 4.41GNRR113 pKa = 11.84LTGSVVSITEE123 pKa = 4.01DD124 pKa = 3.35TVTMDD129 pKa = 4.49FNHH132 pKa = 7.02PLAGEE137 pKa = 4.18TMHH140 pKa = 6.96FEE142 pKa = 4.1GVIQGVRR149 pKa = 11.84DD150 pKa = 3.8ASPEE154 pKa = 3.8EE155 pKa = 3.82IAALFSGGGCGCGNDD170 pKa = 3.43SCGCGDD176 pKa = 4.09EE177 pKa = 5.44GDD179 pKa = 4.05SCGCGSGDD187 pKa = 3.6GGCGGGCSCC196 pKa = 6.0

Molecular weight: 20.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G4G968|A0A1G4G968_9BACT Alpha-L-rhamnosidase OS=Petrimonas mucosa OX=1642646 GN=ING2E5A_2273 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84KK11 pKa = 9.07RR12 pKa = 11.84KK13 pKa = 8.85NKK15 pKa = 10.06HH16 pKa = 4.93GFLSRR21 pKa = 11.84MATKK25 pKa = 10.55NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.17GRR39 pKa = 11.84ARR41 pKa = 11.84LTVSDD46 pKa = 3.89

Molecular weight: 5.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2896

0

2896

1089703

29

2304

376.3

42.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.739 ± 0.035

0.949 ± 0.014

5.414 ± 0.03

6.848 ± 0.043

4.727 ± 0.03

7.032 ± 0.036

1.916 ± 0.019

6.98 ± 0.039

6.126 ± 0.04

9.292 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.017

5.06 ± 0.036

3.981 ± 0.025

3.291 ± 0.023

5.433 ± 0.035

6.383 ± 0.033

5.327 ± 0.03

6.493 ± 0.034

1.324 ± 0.019

4.182 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski