Kaistia soli DSM 19436

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Kaistiaceae; Kaistia; Kaistia soli

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4866 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5IBL2|A0A1M5IBL2_9RHIZ Simple sugar transport system permease protein OS=Kaistia soli DSM 19436 OX=1122133 GN=SAMN02745157_3831 PE=4 SV=1
MM1 pKa = 7.17SQFPASQSGWLPARR15 pKa = 11.84GSALLASASVLALTLGFVPDD35 pKa = 3.74RR36 pKa = 11.84VHH38 pKa = 6.44AAGWNLYY45 pKa = 10.32DD46 pKa = 5.82GYY48 pKa = 8.16TQSYY52 pKa = 8.89SVTYY56 pKa = 10.75ANSLEE61 pKa = 4.1TALADD66 pKa = 4.32KK67 pKa = 9.32DD68 pKa = 4.05TLHH71 pKa = 6.69VGLSVGGSPVTVTMDD86 pKa = 3.2TGSVGLVLSANHH98 pKa = 5.75VASYY102 pKa = 8.59STSGTPGWEE111 pKa = 4.39YY112 pKa = 11.28YY113 pKa = 10.49NSSGLLLTGYY123 pKa = 10.55FNDD126 pKa = 3.8YY127 pKa = 9.19TVEE130 pKa = 4.17LDD132 pKa = 3.82NGTDD136 pKa = 3.43ANGNPTTVTATLPVLVVTEE155 pKa = 4.99AYY157 pKa = 10.06CLGVGSDD164 pKa = 3.59PCDD167 pKa = 3.5AEE169 pKa = 3.97ASKK172 pKa = 11.35NSVSMMGVGYY182 pKa = 10.45DD183 pKa = 3.61RR184 pKa = 11.84NTMGTGSVDD193 pKa = 3.42LSLSGKK199 pKa = 8.08QLNEE203 pKa = 3.93QLNAAPTTSEE213 pKa = 4.44AYY215 pKa = 10.67NLFLNIDD222 pKa = 4.07GMAEE226 pKa = 3.72GALRR230 pKa = 11.84RR231 pKa = 11.84GYY233 pKa = 10.11IITPTGVEE241 pKa = 4.23LGLTAANTSSQAFTYY256 pKa = 10.06AQLVLNSAGTNGATSNWQSVAADD279 pKa = 3.44VTLAGTSSTATLLMDD294 pKa = 3.77TGITGSFFEE303 pKa = 4.79IPGGTEE309 pKa = 3.98GPATAGTVITISLAGGSATYY329 pKa = 10.74SFVVGDD335 pKa = 3.74TANPQTPGTVTIGPPAAAFVNSGLHH360 pKa = 5.64TYY362 pKa = 10.94AGFNVLFDD370 pKa = 4.24ADD372 pKa = 4.02GGFLGVAANGFSGATNASVTQLIAATGPLTLTQAFEE408 pKa = 4.06TDD410 pKa = 4.06LPVMLLDD417 pKa = 4.32ASTINTSTTATFDD430 pKa = 3.17AGIFGPGSLTLNGGTVVLNGAVTNGGGVTAASGTTALNGTMTGNLTVASGASFYY484 pKa = 11.27NYY486 pKa = 10.07NNGYY490 pKa = 10.07AVAAGNILVNDD501 pKa = 4.25GLFVGANSGAAFVNAGTVDD520 pKa = 3.34NSGSFVGAVNNSGSWTNSGTLTGDD544 pKa = 3.35VTNSGTFSNSNLVDD558 pKa = 3.8GNITNTGSLTNTGEE572 pKa = 3.89IEE574 pKa = 4.24GDD576 pKa = 3.7VTSTGPIANQGTVTGTLTVYY596 pKa = 10.1NQHH599 pKa = 6.41SGNGTVGTLSAKK611 pKa = 10.19PGALVSPGNSVGTIIVSGDD630 pKa = 2.98ATFEE634 pKa = 4.55PGSVLYY640 pKa = 10.88AEE642 pKa = 5.53LGANGLSDD650 pKa = 4.17LLVVGGTLVADD661 pKa = 4.67GATLYY666 pKa = 10.68LAAANGFEE674 pKa = 4.15PVLGNSYY681 pKa = 11.14SVIQAGSIASNFTVASPFFGSTASPFPFLGASLDD715 pKa = 3.82GTGVLTLGRR724 pKa = 11.84SALRR728 pKa = 11.84FEE730 pKa = 5.26DD731 pKa = 4.6FAVTQNEE738 pKa = 3.89RR739 pKa = 11.84MAASAAEE746 pKa = 4.1TLGLQSPLNQALALMSIAEE765 pKa = 4.3VPSVFDD771 pKa = 3.66SLSGEE776 pKa = 3.89IAASAEE782 pKa = 4.23STLQQQSIYY791 pKa = 10.71LRR793 pKa = 11.84DD794 pKa = 3.47AVTGRR799 pKa = 11.84VRR801 pKa = 11.84QAFSDD806 pKa = 3.62AAGPEE811 pKa = 4.08ASGSQTARR819 pKa = 11.84LAPGLDD825 pKa = 3.08ATAWTQAYY833 pKa = 7.81GAWGNSWSDD842 pKa = 3.2GNAAAVSRR850 pKa = 11.84SIGGFLLGADD860 pKa = 4.11AALGDD865 pKa = 3.75AWRR868 pKa = 11.84VGLAGGYY875 pKa = 8.16SQSDD879 pKa = 3.66FSLDD883 pKa = 3.42GVGGGGTSDD892 pKa = 3.67NYY894 pKa = 11.34DD895 pKa = 3.18VAIYY899 pKa = 10.46GGTRR903 pKa = 11.84QGDD906 pKa = 3.04ASLRR910 pKa = 11.84FGAGYY915 pKa = 7.69TWHH918 pKa = 7.88DD919 pKa = 3.27IATGRR924 pKa = 11.84TALLPTTAEE933 pKa = 4.26FLSADD938 pKa = 3.95YY939 pKa = 10.89QGGTAQVFGEE949 pKa = 3.96AAYY952 pKa = 10.14DD953 pKa = 3.63VRR955 pKa = 11.84LGRR958 pKa = 11.84AVLEE962 pKa = 4.57PYY964 pKa = 10.99VNLAYY969 pKa = 11.05VNLTMDD975 pKa = 4.65GFWEE979 pKa = 4.33TGGAAALTFAEE990 pKa = 4.67STMSTTFNVLGMRR1003 pKa = 11.84LGQAFDD1009 pKa = 3.67IGNGLQLLTRR1019 pKa = 11.84GSLGWQHH1026 pKa = 6.8AFGDD1030 pKa = 3.88ITPQATAAFLGSSAFTVAGLPIAQDD1055 pKa = 3.19AALIDD1060 pKa = 3.72AFIGFRR1066 pKa = 11.84PTSRR1070 pKa = 11.84VDD1072 pKa = 3.57FGLRR1076 pKa = 11.84YY1077 pKa = 9.89SGQIADD1083 pKa = 4.64DD1084 pKa = 3.82ATDD1087 pKa = 3.46NAVQGTLDD1095 pKa = 3.11IRR1097 pKa = 11.84FF1098 pKa = 3.63

Molecular weight: 110.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5NXS0|A0A1M5NXS0_9RHIZ Uncharacterized protein OS=Kaistia soli DSM 19436 OX=1122133 GN=SAMN02745157_0039 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.43LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.38GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.36VIAQRR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.47KK41 pKa = 9.66LTAA44 pKa = 4.17

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4866

0

4866

1558496

35

3023

320.3

34.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.309 ± 0.05

0.69 ± 0.011

5.77 ± 0.026

5.326 ± 0.034

3.821 ± 0.025

8.841 ± 0.042

1.951 ± 0.016

5.536 ± 0.022

2.898 ± 0.026

10.126 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.356 ± 0.015

2.398 ± 0.023

5.379 ± 0.027

2.722 ± 0.018

7.021 ± 0.04

5.454 ± 0.027

5.349 ± 0.027

7.595 ± 0.029

1.319 ± 0.015

2.137 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski