Corynebacterium lowii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2252 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q0UIN0|A0A0Q0UIN0_9CORY N-acetylmuramoyl-L-alanine amidase OS=Corynebacterium lowii OX=1544413 GN=Clow_01493 PE=3 SV=1
MM1 pKa = 7.52SLRR4 pKa = 11.84FRR6 pKa = 11.84TAATLAASALVTVGVATATAEE27 pKa = 3.74EE28 pKa = 4.32SLPVEE33 pKa = 4.12GALPVEE39 pKa = 4.15GTTWNFQGSSSAYY52 pKa = 7.93FTLNDD57 pKa = 3.96GNIGGNDD64 pKa = 3.34GCNAFGGSATLEE76 pKa = 4.32GDD78 pKa = 3.59TLTVGDD84 pKa = 4.95LFSTMRR90 pKa = 11.84YY91 pKa = 9.86CGDD94 pKa = 3.4GYY96 pKa = 11.4EE97 pKa = 4.48LTTALAGEE105 pKa = 4.47HH106 pKa = 4.69TVEE109 pKa = 4.27VQGDD113 pKa = 4.02TLTLRR118 pKa = 11.84DD119 pKa = 3.86EE120 pKa = 5.89NGTEE124 pKa = 3.98WNFVAAEE131 pKa = 3.96

Molecular weight: 13.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q1DX62|A0A0Q1DX62_9CORY Trehalose import ATP-binding protein SugC OS=Corynebacterium lowii OX=1544413 GN=sugC PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2252

0

2252

707702

31

2178

314.3

33.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.067 ± 0.07

0.73 ± 0.014

5.217 ± 0.043

6.834 ± 0.062

3.084 ± 0.035

8.59 ± 0.046

2.192 ± 0.026

4.65 ± 0.039

2.756 ± 0.046

10.124 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.242 ± 0.027

2.512 ± 0.028

5.243 ± 0.045

3.401 ± 0.034

6.646 ± 0.061

5.961 ± 0.036

5.837 ± 0.038

8.224 ± 0.043

1.438 ± 0.023

2.253 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski