Flavobacterium terrae

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2883 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6FQ51|A0A1M6FQ51_9FLAO Lipopolysaccharide export system ATP-binding protein OS=Flavobacterium terrae OX=415425 GN=SAMN05444363_2283 PE=4 SV=1
MM1 pKa = 6.41KK2 pKa = 10.16QKK4 pKa = 10.8YY5 pKa = 9.02ILFIIFSLLVFKK17 pKa = 11.06GKK19 pKa = 9.92AQNNYY24 pKa = 8.9SVAPIPFQPFIGSLTPLNALDD45 pKa = 5.14DD46 pKa = 4.29MYY48 pKa = 11.78SNIIPLPFSFDD59 pKa = 4.04FYY61 pKa = 11.46GVTYY65 pKa = 10.67NQMIVSTNGFINFTTTSAGGVSPWSFSQQIPNASFPVTNSILGCFEE111 pKa = 5.08DD112 pKa = 5.18LYY114 pKa = 11.03NNSGTGSITYY124 pKa = 9.47GVYY127 pKa = 9.2GTAPYY132 pKa = 10.43RR133 pKa = 11.84KK134 pKa = 8.52FVVYY138 pKa = 10.45FNDD141 pKa = 3.63QPHH144 pKa = 6.42FSCNTIAISSFQMILSEE161 pKa = 4.14TANTIDD167 pKa = 3.15VQLIEE172 pKa = 4.5RR173 pKa = 11.84QPCLGWNSGRR183 pKa = 11.84GVMGIVKK190 pKa = 10.46DD191 pKa = 3.87GANALAAPGRR201 pKa = 11.84NTGSWTANNEE211 pKa = 3.05AWRR214 pKa = 11.84FYY216 pKa = 10.77RR217 pKa = 11.84AGYY220 pKa = 8.34YY221 pKa = 9.83PNYY224 pKa = 10.6SFVRR228 pKa = 11.84CDD230 pKa = 4.34DD231 pKa = 3.86DD232 pKa = 3.68TDD234 pKa = 4.36GYY236 pKa = 11.0QVFNLSVAANDD247 pKa = 4.05LVPANPSSVIFYY259 pKa = 8.42STLTDD264 pKa = 3.4AQADD268 pKa = 4.16TNSITNQTAYY278 pKa = 9.62TNNSNPQIIYY288 pKa = 10.11AKK290 pKa = 9.74EE291 pKa = 3.45NGIIKK296 pKa = 9.01TVTLSVFDD304 pKa = 4.97CNVDD308 pKa = 3.22ADD310 pKa = 4.05NDD312 pKa = 4.34GVSSSTEE319 pKa = 3.71DD320 pKa = 3.37VNNDD324 pKa = 2.91TNLANDD330 pKa = 3.81DD331 pKa = 4.09TDD333 pKa = 4.78FDD335 pKa = 5.31GIPNYY340 pKa = 10.52LDD342 pKa = 4.06NDD344 pKa = 4.18DD345 pKa = 6.02DD346 pKa = 5.91GDD348 pKa = 4.13LVLTNIEE355 pKa = 4.27YY356 pKa = 10.91VFGKK360 pKa = 10.09NVSALLDD367 pKa = 3.7TDD369 pKa = 3.61NDD371 pKa = 4.91GIPNYY376 pKa = 10.35LDD378 pKa = 4.14NDD380 pKa = 4.21DD381 pKa = 5.78DD382 pKa = 6.08GDD384 pKa = 3.99GSLTFLEE391 pKa = 5.53DD392 pKa = 3.51YY393 pKa = 10.9NHH395 pKa = 7.61DD396 pKa = 4.1GNPVNDD402 pKa = 3.65DD403 pKa = 3.78TNFNNIPDD411 pKa = 4.24YY412 pKa = 11.17LDD414 pKa = 3.2QAVTLGVSQVRR425 pKa = 11.84IDD427 pKa = 3.92DD428 pKa = 4.09NAILMYY434 pKa = 9.7PNPATSMLNILNKK447 pKa = 7.52TTEE450 pKa = 4.03NVMLIEE456 pKa = 5.04IYY458 pKa = 10.61NSNGSRR464 pKa = 11.84AKK466 pKa = 10.46SINSTQSLTTIPVSDD481 pKa = 4.34LQSGVYY487 pKa = 8.29FVKK490 pKa = 10.77VIMNNQVVNYY500 pKa = 10.15KK501 pKa = 10.28FIKK504 pKa = 10.38DD505 pKa = 3.28

Molecular weight: 55.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6BEJ7|A0A1M6BEJ7_9FLAO NADH-quinone oxidoreductase subunit N OS=Flavobacterium terrae OX=415425 GN=nuoN PE=3 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.35KK16 pKa = 10.31RR17 pKa = 11.84KK18 pKa = 9.82KK19 pKa = 8.65RR20 pKa = 11.84ARR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.91KK27 pKa = 10.59KK28 pKa = 9.82KK29 pKa = 10.51KK30 pKa = 10.04

Molecular weight: 3.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2883

0

2883

969809

29

3322

336.4

38.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.065 ± 0.058

0.811 ± 0.016

5.282 ± 0.035

6.572 ± 0.056

5.461 ± 0.04

6.184 ± 0.049

1.644 ± 0.022

8.114 ± 0.052

8.33 ± 0.069

8.996 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.187 ± 0.027

6.726 ± 0.053

3.282 ± 0.031

3.423 ± 0.027

3.02 ± 0.029

6.706 ± 0.041

5.817 ± 0.067

6.257 ± 0.038

0.977 ± 0.019

4.147 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski