Lindernia anagallis yellow vein virus satellite DNA beta

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 5.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A5H1F9|A5H1F9_9VIRU C1 protein OS=Lindernia anagallis yellow vein virus satellite DNA beta OX=447605 GN=C1 PE=4 SV=1
MM1 pKa = 7.6TIRR4 pKa = 11.84YY5 pKa = 6.39QTSKK9 pKa = 10.71NIHH12 pKa = 5.05FTIDD16 pKa = 3.02VHH18 pKa = 6.46LKK20 pKa = 9.96NRR22 pKa = 11.84VTVTIRR28 pKa = 11.84LIYY31 pKa = 9.16TRR33 pKa = 11.84SPVMTAITYY42 pKa = 7.39NIPYY46 pKa = 8.56TAEE49 pKa = 3.9EE50 pKa = 4.8NIPPPIITSEE60 pKa = 3.85RR61 pKa = 11.84DD62 pKa = 3.05GAEE65 pKa = 3.89DD66 pKa = 4.36HH67 pKa = 6.59IHH69 pKa = 6.73HH70 pKa = 7.16ILYY73 pKa = 10.52AIYY76 pKa = 10.53DD77 pKa = 3.83DD78 pKa = 5.53VDD80 pKa = 3.43IKK82 pKa = 11.1DD83 pKa = 4.78FKK85 pKa = 11.16PEE87 pKa = 3.79MMLDD91 pKa = 3.4AVDD94 pKa = 3.48IMMMDD99 pKa = 3.63RR100 pKa = 11.84FDD102 pKa = 5.54HH103 pKa = 6.89IGIDD107 pKa = 3.62TDD109 pKa = 4.27GSCRR113 pKa = 11.84IRR115 pKa = 11.84TIHH118 pKa = 6.32NVV120 pKa = 2.87

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A5H1F9|A5H1F9_9VIRU C1 protein OS=Lindernia anagallis yellow vein virus satellite DNA beta OX=447605 GN=C1 PE=4 SV=1
MM1 pKa = 7.6TIRR4 pKa = 11.84YY5 pKa = 6.39QTSKK9 pKa = 10.71NIHH12 pKa = 5.05FTIDD16 pKa = 3.02VHH18 pKa = 6.46LKK20 pKa = 9.96NRR22 pKa = 11.84VTVTIRR28 pKa = 11.84LIYY31 pKa = 9.16TRR33 pKa = 11.84SPVMTAITYY42 pKa = 7.39NIPYY46 pKa = 8.56TAEE49 pKa = 3.9EE50 pKa = 4.8NIPPPIITSEE60 pKa = 3.85RR61 pKa = 11.84DD62 pKa = 3.05GAEE65 pKa = 3.89DD66 pKa = 4.36HH67 pKa = 6.59IHH69 pKa = 6.73HH70 pKa = 7.16ILYY73 pKa = 10.52AIYY76 pKa = 10.53DD77 pKa = 3.83DD78 pKa = 5.53VDD80 pKa = 3.43IKK82 pKa = 11.1DD83 pKa = 4.78FKK85 pKa = 11.16PEE87 pKa = 3.79MMLDD91 pKa = 3.4AVDD94 pKa = 3.48IMMMDD99 pKa = 3.63RR100 pKa = 11.84FDD102 pKa = 5.54HH103 pKa = 6.89IGIDD107 pKa = 3.62TDD109 pKa = 4.27GSCRR113 pKa = 11.84IRR115 pKa = 11.84TIHH118 pKa = 6.32NVV120 pKa = 2.87

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

120

120

120

120.0

13.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.167 ± 0.0

0.833 ± 0.0

10.833 ± 0.0

4.167 ± 0.0

2.5 ± 0.0

2.5 ± 0.0

5.833 ± 0.0

15.833 ± 0.0

3.333 ± 0.0

3.333 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.833 ± 0.0

4.167 ± 0.0

5.0 ± 0.0

0.833 ± 0.0

6.667 ± 0.0

3.333 ± 0.0

10.0 ± 0.0

5.833 ± 0.0

0.0 ± 0.0

5.0 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski