Trachymyrmex cornetzi

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Attini

Average proteome isoelectric point is 7.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 18657 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A151IS11|A0A151IS11_9HYME Uncharacterized protein OS=Trachymyrmex cornetzi OX=471704 GN=ALC57_18373 PE=4 SV=1
MM1 pKa = 7.94DD2 pKa = 5.24EE3 pKa = 5.73DD4 pKa = 3.7MDD6 pKa = 4.85DD7 pKa = 5.3VEE9 pKa = 4.84FQNIGNIEE17 pKa = 4.41DD18 pKa = 3.47GVEE21 pKa = 3.65FDD23 pKa = 4.21EE24 pKa = 6.1NIGNGEE30 pKa = 4.05NMDD33 pKa = 3.67DD34 pKa = 3.9VVFEE38 pKa = 5.01NIRR41 pKa = 11.84NMNAEE46 pKa = 3.91QLNEE50 pKa = 4.32LFNGTDD56 pKa = 2.99VDD58 pKa = 4.75FEE60 pKa = 4.98NILDD64 pKa = 3.77QDD66 pKa = 3.99SSDD69 pKa = 3.91EE70 pKa = 3.98EE71 pKa = 4.99SILSDD76 pKa = 3.74DD77 pKa = 4.58VGFTSDD83 pKa = 2.93ASEE86 pKa = 4.39YY87 pKa = 9.16EE88 pKa = 3.72TDD90 pKa = 3.49IEE92 pKa = 4.63EE93 pKa = 4.41KK94 pKa = 10.32FIPAAEE100 pKa = 3.67IRR102 pKa = 11.84ALNDD106 pKa = 3.1RR107 pKa = 11.84TKK109 pKa = 10.24YY110 pKa = 11.06CMIQSYY116 pKa = 7.87YY117 pKa = 7.92TTGGPLTVCAACMVLLANIDD137 pKa = 4.08TVGMHH142 pKa = 6.66YY143 pKa = 10.15IKK145 pKa = 10.33KK146 pKa = 10.05HH147 pKa = 5.18SINYY151 pKa = 9.08IDD153 pKa = 4.24ALNGRR158 pKa = 11.84SCTNCRR164 pKa = 11.84VALYY168 pKa = 9.49TIFPCNKK175 pKa = 9.55CPQCTNN181 pKa = 3.27

Molecular weight: 20.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A151JNI6|A0A151JNI6_9HYME Uncharacterized protein OS=Trachymyrmex cornetzi OX=471704 GN=ALC57_02710 PE=4 SV=1
TT1 pKa = 7.18PRR3 pKa = 11.84HH4 pKa = 5.26SFPRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84TPRR13 pKa = 11.84HH14 pKa = 4.65SFPRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84TPRR23 pKa = 11.84HH24 pKa = 4.65SFPRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84TPRR33 pKa = 11.84HH34 pKa = 4.65SFPRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84TPRR43 pKa = 11.84HH44 pKa = 4.65SFPRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84TPRR53 pKa = 11.84HH54 pKa = 4.65SFPRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84TPRR63 pKa = 11.84HH64 pKa = 4.65SFPRR68 pKa = 11.84RR69 pKa = 11.84RR70 pKa = 11.84TPRR73 pKa = 11.84HH74 pKa = 4.65SFPRR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84TPRR83 pKa = 11.84HH84 pKa = 4.65SFPRR88 pKa = 11.84RR89 pKa = 11.84RR90 pKa = 11.84TPRR93 pKa = 11.84HH94 pKa = 4.65SFPRR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84TPRR103 pKa = 11.84HH104 pKa = 4.65SFPRR108 pKa = 11.84RR109 pKa = 11.84RR110 pKa = 11.84TPRR113 pKa = 11.84HH114 pKa = 4.65SFPRR118 pKa = 11.84RR119 pKa = 11.84RR120 pKa = 11.84TPRR123 pKa = 11.84HH124 pKa = 5.13PLPRR128 pKa = 11.84RR129 pKa = 11.84QTSKK133 pKa = 10.82RR134 pKa = 11.84LIPRR138 pKa = 11.84RR139 pKa = 11.84LLSRR143 pKa = 11.84SLIDD147 pKa = 3.3TFFVDD152 pKa = 5.21AVNTT156 pKa = 4.09

Molecular weight: 19.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

18657

0

18657

7760051

14

16967

415.9

46.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.9 ± 0.016

2.082 ± 0.03

5.301 ± 0.016

6.548 ± 0.03

3.735 ± 0.015

5.149 ± 0.027

2.536 ± 0.009

6.232 ± 0.024

6.451 ± 0.025

8.971 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.276 ± 0.009

5.235 ± 0.019

4.711 ± 0.025

4.004 ± 0.018

6.012 ± 0.025

8.021 ± 0.021

5.992 ± 0.019

5.923 ± 0.014

1.094 ± 0.007

3.274 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski