Extra small virus

Taxonomy: Viruses; Riboviria; Sarthroviridae; Macronovirus; Macrobrachium satellite virus 1

Average proteome isoelectric point is 8.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A8UX71|A8UX71_9VIRU Capsid protein OS=Extra small virus OX=230604 GN=cp17 PE=4 SV=1
MM1 pKa = 7.63NKK3 pKa = 10.13RR4 pKa = 11.84INNNRR9 pKa = 11.84RR10 pKa = 11.84TMRR13 pKa = 11.84SRR15 pKa = 11.84RR16 pKa = 11.84GRR18 pKa = 11.84GRR20 pKa = 11.84TMGSNLIPYY29 pKa = 9.25ANSPVPIPYY38 pKa = 8.5TPPVTPVTVIGNPRR52 pKa = 11.84KK53 pKa = 6.74TTWIDD58 pKa = 2.69IDD60 pKa = 4.07LSSEE64 pKa = 3.75EE65 pKa = 4.13SGIYY69 pKa = 9.22TLTVGSYY76 pKa = 10.39RR77 pKa = 11.84NRR79 pKa = 11.84ITKK82 pKa = 10.28LGPSKK87 pKa = 10.75PNFIIEE93 pKa = 4.1KK94 pKa = 7.61VAAYY98 pKa = 7.84AAPGDD103 pKa = 4.03YY104 pKa = 10.35KK105 pKa = 11.37VVLNDD110 pKa = 4.07FKK112 pKa = 11.07TGIQVVDD119 pKa = 3.81EE120 pKa = 4.14GSYY123 pKa = 10.19AHH125 pKa = 7.35RR126 pKa = 11.84AAAGILYY133 pKa = 9.16PPAAQIFYY141 pKa = 10.11GISATGTLNTITTTAKK157 pKa = 10.72DD158 pKa = 3.49PVPVVRR164 pKa = 11.84ALVTYY169 pKa = 9.59WDD171 pKa = 4.03SEE173 pKa = 4.24QQ174 pKa = 3.47

Molecular weight: 19.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8UX71|A8UX71_9VIRU Capsid protein OS=Extra small virus OX=230604 GN=cp17 PE=4 SV=1
MM1 pKa = 7.63NKK3 pKa = 10.13RR4 pKa = 11.84INNNRR9 pKa = 11.84RR10 pKa = 11.84TMRR13 pKa = 11.84SRR15 pKa = 11.84RR16 pKa = 11.84GRR18 pKa = 11.84GRR20 pKa = 11.84TMGSNLIPYY29 pKa = 9.25ANSPVPIPYY38 pKa = 8.5TPPVTPVTVIGNPRR52 pKa = 11.84KK53 pKa = 6.74TTWIDD58 pKa = 2.69IDD60 pKa = 4.07LSSEE64 pKa = 3.75EE65 pKa = 4.13SGIYY69 pKa = 9.22TLTVGSYY76 pKa = 10.39RR77 pKa = 11.84NRR79 pKa = 11.84ITKK82 pKa = 10.28LGPSKK87 pKa = 10.75PNFIIEE93 pKa = 4.1KK94 pKa = 7.61VAAYY98 pKa = 7.84AAPGDD103 pKa = 4.03YY104 pKa = 10.35KK105 pKa = 11.37VVLNDD110 pKa = 4.07FKK112 pKa = 11.07TGIQVVDD119 pKa = 3.81EE120 pKa = 4.14GSYY123 pKa = 10.19AHH125 pKa = 7.35RR126 pKa = 11.84AAAGILYY133 pKa = 9.16PPAAQIFYY141 pKa = 10.11GISATGTLNTITTTAKK157 pKa = 10.72DD158 pKa = 3.49PVPVVRR164 pKa = 11.84ALVTYY169 pKa = 9.59WDD171 pKa = 4.03SEE173 pKa = 4.24QQ174 pKa = 3.47

Molecular weight: 19.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

174

174

174

174.0

19.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.046 ± 0.0

0.0 ± 0.0

4.023 ± 0.0

2.874 ± 0.0

1.724 ± 0.0

7.471 ± 0.0

0.575 ± 0.0

8.621 ± 0.0

4.598 ± 0.0

4.598 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.724 ± 0.0

6.322 ± 0.0

8.621 ± 0.0

1.724 ± 0.0

7.471 ± 0.0

6.322 ± 0.0

10.345 ± 0.0

8.046 ± 0.0

1.149 ± 0.0

5.747 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski