Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4821 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q87LN6|Q87LN6_VIBPA Sigma-E factor regulatory protein RseC OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP2575 PE=4 SV=1
MM1 pKa = 7.41SHH3 pKa = 6.51EE4 pKa = 4.59DD5 pKa = 3.36EE6 pKa = 4.41YY7 pKa = 11.8LSVEE11 pKa = 4.13EE12 pKa = 5.07LIEE15 pKa = 4.01IQKK18 pKa = 10.79EE19 pKa = 3.96EE20 pKa = 4.06TRR22 pKa = 11.84DD23 pKa = 3.25IIAALLEE30 pKa = 5.14DD31 pKa = 4.8GSDD34 pKa = 3.49PDD36 pKa = 3.36SLYY39 pKa = 10.83EE40 pKa = 4.15IEE42 pKa = 4.37HH43 pKa = 6.59HH44 pKa = 7.1LFAEE48 pKa = 5.16DD49 pKa = 4.33FDD51 pKa = 4.45TLEE54 pKa = 4.3KK55 pKa = 10.85AVVEE59 pKa = 4.0AFKK62 pKa = 10.62MGFEE66 pKa = 4.02VLEE69 pKa = 4.38AEE71 pKa = 4.32EE72 pKa = 4.84TEE74 pKa = 5.32DD75 pKa = 4.16EE76 pKa = 4.91DD77 pKa = 5.29GNKK80 pKa = 9.92LLCCDD85 pKa = 3.51ATMEE89 pKa = 4.41SALNAEE95 pKa = 4.98AIDD98 pKa = 3.82AQVEE102 pKa = 4.49KK103 pKa = 10.53LVHH106 pKa = 5.94LAEE109 pKa = 5.18KK110 pKa = 10.82YY111 pKa = 10.77DD112 pKa = 3.78IIYY115 pKa = 10.15DD116 pKa = 3.64GWGTYY121 pKa = 9.39YY122 pKa = 10.49EE123 pKa = 5.11GEE125 pKa = 4.09DD126 pKa = 3.63ALYY129 pKa = 10.83SDD131 pKa = 5.46EE132 pKa = 5.71DD133 pKa = 4.72DD134 pKa = 3.79EE135 pKa = 6.94DD136 pKa = 3.83EE137 pKa = 4.42

Molecular weight: 15.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q87RZ0|Q87RZ0_VIBPA Uncharacterized protein OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP0634 PE=4 SV=1
MM1 pKa = 7.66RR2 pKa = 11.84RR3 pKa = 11.84RR4 pKa = 11.84RR5 pKa = 11.84VQSKK9 pKa = 10.26RR10 pKa = 11.84LNKK13 pKa = 8.61TVAAIRR19 pKa = 11.84RR20 pKa = 11.84KK21 pKa = 10.1RR22 pKa = 11.84KK23 pKa = 8.14LTTMKK28 pKa = 10.52KK29 pKa = 9.88KK30 pKa = 9.26VSSRR34 pKa = 11.84NRR36 pKa = 11.84VFVHH40 pKa = 6.24LVNHH44 pKa = 6.96

Molecular weight: 5.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4821

0

4821

1490746

14

6084

309.2

34.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.565 ± 0.035

1.045 ± 0.013

5.502 ± 0.042

6.542 ± 0.042

4.201 ± 0.029

6.776 ± 0.037

2.242 ± 0.019

6.18 ± 0.028

5.385 ± 0.035

10.187 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.739 ± 0.024

4.265 ± 0.026

3.892 ± 0.023

4.534 ± 0.031

4.475 ± 0.035

6.587 ± 0.03

5.406 ± 0.042

7.196 ± 0.033

1.24 ± 0.014

3.042 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski