Chinook salmon bafinivirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Tornidovirineae; Tobaniviridae; Piscanivirinae; Oncotshavirus; Salnivirus; Chinook salmon nidovirus 1

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0E3J9S7|A0A0E3J9S7_9NIDO Putative nucleocapsid protein OS=Chinook salmon bafinivirus OX=1611837 PE=4 SV=1
MM1 pKa = 7.9ANLLWLTLLITLGLVSAQINTTLPDD26 pKa = 4.03CPIPTCTYY34 pKa = 8.94TPPTTTPFDD43 pKa = 3.62HH44 pKa = 7.0TSLHH48 pKa = 6.6SFFTHH53 pKa = 5.74DD54 pKa = 2.97TNYY57 pKa = 11.12AFLLSLKK64 pKa = 10.54YY65 pKa = 10.64NGTFIPATMAMPANNLSQTYY85 pKa = 7.86TLNYY89 pKa = 9.68KK90 pKa = 10.18NVFVNVPDD98 pKa = 3.93SQLPPPQRR106 pKa = 11.84SNTQLAVVATTASCLTATYY125 pKa = 8.89TAIPGTIPALAATDD139 pKa = 3.9MYY141 pKa = 10.74CVKK144 pKa = 9.68FTQSSNFVYY153 pKa = 10.37LYY155 pKa = 8.22DD156 pKa = 3.75TTVNTPVGVLLKK168 pKa = 10.87NPTAPVVTTILSTIMVNRR186 pKa = 11.84PTTVSTSQLLSNIYY200 pKa = 10.41SLMRR204 pKa = 11.84TRR206 pKa = 11.84SNVIQQQFTCTSCLFAIDD224 pKa = 4.13ASTGRR229 pKa = 11.84AATSPTTHH237 pKa = 7.46LLNNWSPSFFEE248 pKa = 4.79TKK250 pKa = 9.38TAMLDD255 pKa = 3.5HH256 pKa = 7.3VSMNTIYY263 pKa = 9.17QTARR267 pKa = 11.84GVTRR271 pKa = 11.84EE272 pKa = 4.0TFTSYY277 pKa = 10.88ILNAAKK283 pKa = 9.01TAAYY287 pKa = 10.33ARR289 pKa = 11.84GSPAYY294 pKa = 10.28YY295 pKa = 9.51IFSFAAIARR304 pKa = 11.84YY305 pKa = 7.88HH306 pKa = 5.23QAMVTPYY313 pKa = 10.13NYY315 pKa = 10.49NIGKK319 pKa = 9.26LCEE322 pKa = 3.88ATAACCLSNGIEE334 pKa = 4.26HH335 pKa = 6.9FDD337 pKa = 3.03IYY339 pKa = 10.93TWLFHH344 pKa = 6.74YY345 pKa = 10.67YY346 pKa = 10.8GFMKK350 pKa = 10.43SKK352 pKa = 10.5VYY354 pKa = 10.99SEE356 pKa = 4.61TFTTNPVLTSVINLATSIKK375 pKa = 9.56GKK377 pKa = 10.02HH378 pKa = 5.83SSYY381 pKa = 11.27CDD383 pKa = 3.31LTPYY387 pKa = 10.96SSFTAYY393 pKa = 10.87NLIMLQDD400 pKa = 3.48VVEE403 pKa = 4.41QYY405 pKa = 10.92QGTRR409 pKa = 11.84TTSTYY414 pKa = 11.58ANNFLNLTDD423 pKa = 3.49INGYY427 pKa = 9.87LPYY430 pKa = 9.53STHH433 pKa = 6.42TPLPQNYY440 pKa = 7.98QNYY443 pKa = 7.91MPFATYY449 pKa = 11.08LLATFYY455 pKa = 11.36SSFTLQQKK463 pKa = 10.31FDD465 pKa = 3.45FHH467 pKa = 7.44RR468 pKa = 11.84FLQSVCYY475 pKa = 9.25YY476 pKa = 10.67DD477 pKa = 3.62SGFISRR483 pKa = 11.84NQAYY487 pKa = 10.13HH488 pKa = 6.38SICHH492 pKa = 6.88IITLKK497 pKa = 10.11TSSSVPYY504 pKa = 9.39PAEE507 pKa = 4.03LQWPFTALPSSGYY520 pKa = 10.59DD521 pKa = 3.17SYY523 pKa = 11.57PVSTGLGTVAVGNTNPLDD541 pKa = 3.83YY542 pKa = 10.86PGICYY547 pKa = 10.15QSVCLTHH554 pKa = 5.66PTINFRR560 pKa = 11.84LLLSEE565 pKa = 5.98LPIKK569 pKa = 10.36WEE571 pKa = 3.69VRR573 pKa = 11.84PEE575 pKa = 4.42GIYY578 pKa = 9.03VTSRR582 pKa = 11.84NDD584 pKa = 3.38PTCLNFKK591 pKa = 9.41TSQLGTVFITLYY603 pKa = 10.72DD604 pKa = 3.89SNAXCTLQQTTYY616 pKa = 10.73SRR618 pKa = 11.84SAVLRR623 pKa = 11.84QVNTFTPNATDD634 pKa = 3.54LVVPYY639 pKa = 10.41GKK641 pKa = 8.51TPIYY645 pKa = 10.52NGAYY649 pKa = 9.78NINSTASGAVSXSTNTHH666 pKa = 6.31YY667 pKa = 10.48IPRR670 pKa = 11.84LLTSVLTPQSDD681 pKa = 4.12YY682 pKa = 11.2KK683 pKa = 10.13ITPTTTNLEE692 pKa = 4.11PFVEE696 pKa = 4.47INGTTFYY703 pKa = 11.39YY704 pKa = 10.47DD705 pKa = 3.2ANQAYY710 pKa = 10.47VNTSDD715 pKa = 4.41VYY717 pKa = 10.42QANVDD722 pKa = 4.0FGLPQTFSLDD732 pKa = 3.52TSFLNCTAFLCASDD746 pKa = 4.14YY747 pKa = 11.45KK748 pKa = 10.89CIADD752 pKa = 4.3FSPICSATQPLIDD765 pKa = 5.38ALLQTYY771 pKa = 7.33TLYY774 pKa = 10.82NQQLTLYY781 pKa = 9.19NSSLLTIQAAANYY794 pKa = 10.06LYY796 pKa = 8.9DD797 pKa = 3.09TRR799 pKa = 11.84TRR801 pKa = 11.84TRR803 pKa = 11.84RR804 pKa = 11.84SLLSTVNLGYY814 pKa = 11.06GDD816 pKa = 4.95VFQQPAWVYY825 pKa = 10.45EE826 pKa = 4.14IGATAAIPMIGPAVSVGLLASRR848 pKa = 11.84VASIEE853 pKa = 3.93STLYY857 pKa = 10.83QITQGVKK864 pKa = 9.38EE865 pKa = 5.15SIMAMNTKK873 pKa = 9.88LDD875 pKa = 3.98KK876 pKa = 10.51IANILHH882 pKa = 6.39SDD884 pKa = 3.74IEE886 pKa = 4.39RR887 pKa = 11.84LGLTVNTLASSFNTFTKK904 pKa = 10.55QVTDD908 pKa = 3.39KK909 pKa = 10.64FASVDD914 pKa = 3.45VAFNDD919 pKa = 4.54LSTSLNTLTTTTTVGASYY937 pKa = 10.35AAQINFATTTLTNLEE952 pKa = 4.21VQISQTTDD960 pKa = 2.68HH961 pKa = 6.98ALSCIAALNEE971 pKa = 4.4HH972 pKa = 6.37VLSPHH977 pKa = 6.93CISVSQLSAYY987 pKa = 8.28TPNALSNIGEE997 pKa = 4.39KK998 pKa = 10.54LVLTHH1003 pKa = 6.64YY1004 pKa = 10.85INGSLITFYY1013 pKa = 11.11HH1014 pKa = 6.95LIASKK1019 pKa = 10.58GVYY1022 pKa = 9.56RR1023 pKa = 11.84PLPKK1027 pKa = 9.67MYY1029 pKa = 10.51NSTHH1033 pKa = 6.38HH1034 pKa = 6.71LVATTGFYY1042 pKa = 10.47NGHH1045 pKa = 6.93CIFCGEE1051 pKa = 4.56HH1052 pKa = 5.81YY1053 pKa = 10.62CDD1055 pKa = 3.65ISVSVPCDD1063 pKa = 3.23YY1064 pKa = 10.91AYY1066 pKa = 10.25EE1067 pKa = 4.2PLKK1070 pKa = 10.55STVLAAYY1077 pKa = 8.35PLTTGVALLTLDD1089 pKa = 3.47STATNFIINYY1099 pKa = 9.02NNAPLISSSVPQPPIINNTDD1119 pKa = 3.09GTVITLQQQIIQLQTQFDD1137 pKa = 4.07HH1138 pKa = 7.17FNISSNFHH1146 pKa = 5.78VSEE1149 pKa = 3.92IQPIIDD1155 pKa = 3.87YY1156 pKa = 11.06YY1157 pKa = 10.58NAQINSSLNQIVDD1170 pKa = 4.26FGNGSTSNVGTIILIVLVVALALAAAIAIICGLKK1204 pKa = 10.12HH1205 pKa = 5.93

Molecular weight: 132.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0E3J9X8|A0A0E3J9X8_9NIDO Membrane protein OS=Chinook salmon bafinivirus OX=1611837 PE=4 SV=1
MM1 pKa = 7.56AFYY4 pKa = 9.94GPPMMPMSMPASFPPRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84APKK25 pKa = 9.86KK26 pKa = 10.13RR27 pKa = 11.84PQQKK31 pKa = 9.51KK32 pKa = 7.16QPKK35 pKa = 8.17PQPKK39 pKa = 9.39PLNDD43 pKa = 3.56QQKK46 pKa = 7.53TAVAKK51 pKa = 9.94EE52 pKa = 4.32AIAKK56 pKa = 7.53ATTVPMPPMAPVVKK70 pKa = 9.83TSLRR74 pKa = 11.84TQVIKK79 pKa = 10.84GKK81 pKa = 10.44RR82 pKa = 11.84GEE84 pKa = 4.1LQDD87 pKa = 3.2ARR89 pKa = 11.84GRR91 pKa = 11.84LTQSEE96 pKa = 4.26INQLYY101 pKa = 9.01FQIATALNSGLGEE114 pKa = 4.04IGIHH118 pKa = 6.04NAATQEE124 pKa = 4.05GVRR127 pKa = 11.84LIVRR131 pKa = 11.84LNLAPPNSIAEE142 pKa = 4.29KK143 pKa = 10.02LYY145 pKa = 10.31KK146 pKa = 10.24SHH148 pKa = 7.25AAAHH152 pKa = 6.14LNSEE156 pKa = 4.18ALEE159 pKa = 4.43SKK161 pKa = 10.49FKK163 pKa = 10.71EE164 pKa = 4.26RR165 pKa = 11.84EE166 pKa = 3.9SDD168 pKa = 3.67PLFHH172 pKa = 7.78FSTTPEE178 pKa = 3.71

Molecular weight: 19.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

10919

178

7011

2183.8

244.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.896 ± 0.283

1.951 ± 0.18

4.515 ± 0.361

3.627 ± 0.419

4.506 ± 0.169

4.277 ± 0.197

3.7 ± 0.377

6.768 ± 0.155

4.671 ± 0.524

9.387 ± 0.403

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.914 ± 0.225

5.696 ± 0.277

5.761 ± 0.254

4.185 ± 0.153

2.931 ± 0.217

7.217 ± 0.394

10.505 ± 0.702

5.843 ± 0.16

0.632 ± 0.035

4.991 ± 0.372
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski