Planococcus sp. PAMC 21323

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus; unclassified Planococcus

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3084 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4RDN9|A0A0B4RDN9_9BACL Uncharacterized protein OS=Planococcus sp. PAMC 21323 OX=1526927 GN=Plano_2314 PE=4 SV=1
MM1 pKa = 7.2TRR3 pKa = 11.84RR4 pKa = 11.84TSKK7 pKa = 10.42EE8 pKa = 3.53IKK10 pKa = 8.95KK11 pKa = 8.48TNQIIAALSIALVLVMALGIYY32 pKa = 10.82LMMKK36 pKa = 9.62PDD38 pKa = 4.39LPAEE42 pKa = 4.14TRR44 pKa = 11.84PPQSTQQQTEE54 pKa = 4.1SGTPEE59 pKa = 4.38AEE61 pKa = 4.05TEE63 pKa = 4.15LASMIANAKK72 pKa = 5.94THH74 pKa = 6.26VYY76 pKa = 9.01TLYY79 pKa = 10.62TDD81 pKa = 4.87LEE83 pKa = 4.35QGSGFLINNQGDD95 pKa = 3.95ILTNAHH101 pKa = 5.65VVLDD105 pKa = 3.96ASYY108 pKa = 8.65ITVKK112 pKa = 10.86NSDD115 pKa = 3.36GQEE118 pKa = 4.04FNGNLIGISEE128 pKa = 4.39TQDD131 pKa = 3.37LAIVRR136 pKa = 11.84VSEE139 pKa = 4.18LAGKK143 pKa = 9.74EE144 pKa = 3.74PLEE147 pKa = 4.66IEE149 pKa = 4.44MEE151 pKa = 4.21PVDD154 pKa = 3.24IGTPVVAIGSPNDD167 pKa = 3.43QSNTATIGEE176 pKa = 4.28ITDD179 pKa = 3.79TEE181 pKa = 5.05LDD183 pKa = 3.56FSDD186 pKa = 3.23QFEE189 pKa = 4.51YY190 pKa = 10.94TNLYY194 pKa = 9.79EE195 pKa = 4.16MSAEE199 pKa = 3.9IAQGSSGGPLIAADD213 pKa = 3.68TGKK216 pKa = 10.77LLGINSIIIEE226 pKa = 4.27EE227 pKa = 4.24NPDD230 pKa = 3.2LGYY233 pKa = 10.65AIPIYY238 pKa = 8.4TVWDD242 pKa = 3.63QLTEE246 pKa = 4.58WINDD250 pKa = 3.77PLITEE255 pKa = 4.13EE256 pKa = 4.48EE257 pKa = 4.51EE258 pKa = 4.96IVLQDD263 pKa = 3.55VKK265 pKa = 11.03DD266 pKa = 3.81AYY268 pKa = 10.92FDD270 pKa = 3.82EE271 pKa = 5.87DD272 pKa = 3.89FLAGFISAYY281 pKa = 10.65YY282 pKa = 9.92EE283 pKa = 3.93LLPYY287 pKa = 10.39SLNDD291 pKa = 3.65RR292 pKa = 11.84EE293 pKa = 4.46STYY296 pKa = 10.97YY297 pKa = 9.52MSYY300 pKa = 10.53IFPGSNAEE308 pKa = 4.0QQATGLIEE316 pKa = 4.7EE317 pKa = 4.64YY318 pKa = 10.7SDD320 pKa = 3.73PNLIYY325 pKa = 10.75DD326 pKa = 3.8VVKK329 pKa = 8.98PTITSIEE336 pKa = 4.01IEE338 pKa = 4.17GDD340 pKa = 3.55SALVEE345 pKa = 4.26AEE347 pKa = 4.68AEE349 pKa = 4.1FTYY352 pKa = 10.6HH353 pKa = 7.54DD354 pKa = 4.05KK355 pKa = 11.48ASDD358 pKa = 3.34KK359 pKa = 11.23SSTISHH365 pKa = 6.62KK366 pKa = 10.87GMYY369 pKa = 8.65TVVIDD374 pKa = 4.44EE375 pKa = 4.51YY376 pKa = 11.55GDD378 pKa = 3.67YY379 pKa = 10.99QIDD382 pKa = 4.56GIVNQQ387 pKa = 4.23

Molecular weight: 42.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4RGE3|A0A0B4RGE3_9BACL Anthranilate synthase amidotransferase component OS=Planococcus sp. PAMC 21323 OX=1526927 GN=Plano_2877 PE=4 SV=1
MM1 pKa = 7.61TLRR4 pKa = 11.84TYY6 pKa = 10.57QPNTRR11 pKa = 11.84KK12 pKa = 9.66HH13 pKa = 5.87SKK15 pKa = 8.83VHH17 pKa = 5.7GFRR20 pKa = 11.84ARR22 pKa = 11.84MSTKK26 pKa = 9.52NGRR29 pKa = 11.84RR30 pKa = 11.84IIAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 8.83GRR40 pKa = 11.84KK41 pKa = 8.75VLSAA45 pKa = 4.05

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3084

0

3084

915920

37

1846

297.0

33.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.696 ± 0.048

0.563 ± 0.013

5.243 ± 0.038

7.705 ± 0.055

4.598 ± 0.033

6.93 ± 0.047

1.997 ± 0.02

7.534 ± 0.04

6.336 ± 0.042

9.823 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.92 ± 0.024

4.051 ± 0.033

3.6 ± 0.019

3.822 ± 0.03

4.003 ± 0.028

6.067 ± 0.03

5.643 ± 0.028

7.167 ± 0.034

1.0 ± 0.016

3.3 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski