Penicillium coprophilum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8993 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V6UCI3|A0A1V6UCI3_9EURO Acetohydroxy-acid synthase small subunit OS=Penicillium coprophilum OX=36646 GN=PENCOP_c012G00357 PE=3 SV=1
MM1 pKa = 7.26HH2 pKa = 6.55TQKK5 pKa = 11.08LLPLCGLLLASNIAIASKK23 pKa = 10.91LDD25 pKa = 3.82LDD27 pKa = 5.33DD28 pKa = 5.08VPTPCRR34 pKa = 11.84PACSSVIRR42 pKa = 11.84TAKK45 pKa = 10.47SCDD48 pKa = 3.26AKK50 pKa = 10.81HH51 pKa = 6.04EE52 pKa = 4.29RR53 pKa = 11.84DD54 pKa = 3.57SAEE57 pKa = 3.92IQCICDD63 pKa = 2.94WDD65 pKa = 3.85AAKK68 pKa = 8.92TQIPLCSACITQYY81 pKa = 11.13QSDD84 pKa = 3.51KK85 pKa = 10.79RR86 pKa = 11.84NNNFTDD92 pKa = 3.83GDD94 pKa = 3.82RR95 pKa = 11.84GDD97 pKa = 4.43YY98 pKa = 11.08DD99 pKa = 5.61DD100 pKa = 6.83DD101 pKa = 6.73SDD103 pKa = 6.56DD104 pKa = 6.05DD105 pKa = 6.18DD106 pKa = 6.57DD107 pKa = 6.68DD108 pKa = 6.15NEE110 pKa = 4.55ALDD113 pKa = 4.68LVYY116 pKa = 10.76SCSLTTTTYY125 pKa = 11.04NSAAVTTVTGTSTSTATSNTATTTSSSSTSEE156 pKa = 4.18TNSQGSTGSTSSGSGSSDD174 pKa = 3.12SVGNSAGAASSATSIPDD191 pKa = 3.17AAAGISVPGAASMAGVMGLMALAWLL216 pKa = 4.36

Molecular weight: 22.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V6UUQ0|A0A1V6UUQ0_9EURO SGNH_hydro domain-containing protein OS=Penicillium coprophilum OX=36646 GN=PENCOP_c004G00999 PE=4 SV=1
MM1 pKa = 6.97FCLRR5 pKa = 11.84ARR7 pKa = 11.84AVPSTFRR14 pKa = 11.84ATTSAMRR21 pKa = 11.84TPMNRR26 pKa = 11.84FAKK29 pKa = 10.14IPQQLSTPSTTLSSRR44 pKa = 11.84SFSSLLSTPTRR55 pKa = 11.84FQPSRR60 pKa = 11.84TLGARR65 pKa = 11.84LSSPITTATASAFSPLSSLRR85 pKa = 11.84SQKK88 pKa = 10.68APSQSRR94 pKa = 11.84SFSASASLGVRR105 pKa = 11.84RR106 pKa = 11.84VTFRR110 pKa = 11.84PSRR113 pKa = 11.84RR114 pKa = 11.84VQKK117 pKa = 10.3RR118 pKa = 11.84RR119 pKa = 11.84HH120 pKa = 5.75GYY122 pKa = 9.09LARR125 pKa = 11.84KK126 pKa = 9.08KK127 pKa = 10.39DD128 pKa = 3.6RR129 pKa = 11.84NGRR132 pKa = 11.84KK133 pKa = 6.83TLIRR137 pKa = 11.84RR138 pKa = 11.84TLKK141 pKa = 10.34GRR143 pKa = 11.84KK144 pKa = 7.8EE145 pKa = 4.02LSWW148 pKa = 4.66

Molecular weight: 16.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8993

0

8993

4534520

12

9592

504.2

55.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.391 ± 0.025

1.227 ± 0.009

5.642 ± 0.017

6.108 ± 0.027

3.817 ± 0.016

6.751 ± 0.02

2.432 ± 0.01

5.191 ± 0.017

4.687 ± 0.024

9.016 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.276 ± 0.01

3.756 ± 0.014

5.996 ± 0.026

4.05 ± 0.018

5.906 ± 0.021

8.423 ± 0.029

5.968 ± 0.018

6.127 ± 0.017

1.463 ± 0.01

2.774 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski