Xanthomonas phage RiverRider

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Schitoviridae; Riverridervirus; Xanthomonas virus RiverRider

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 89 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1JUQ7|A0A2P1JUQ7_9CAUD Uncharacterized protein OS=Xanthomonas phage RiverRider OX=2108116 GN=RIVERRIDER_4 PE=4 SV=1
MM1 pKa = 7.55NYY3 pKa = 9.7IGDD6 pKa = 4.49NIWHH10 pKa = 6.53NEE12 pKa = 3.83VATDD16 pKa = 4.35LYY18 pKa = 10.4PVGYY22 pKa = 10.03YY23 pKa = 10.52FSDD26 pKa = 3.33EE27 pKa = 4.38TNDD30 pKa = 4.1LNGPYY35 pKa = 10.74DD36 pKa = 4.12NDD38 pKa = 3.45TAAAIAACSHH48 pKa = 5.93AVSLGG53 pKa = 3.25

Molecular weight: 5.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1JUT4|A0A2P1JUT4_9CAUD Uncharacterized protein OS=Xanthomonas phage RiverRider OX=2108116 GN=RIVERRIDER_37 PE=4 SV=1
MM1 pKa = 7.93SIRR4 pKa = 11.84TRR6 pKa = 11.84IAGIASAVGATKK18 pKa = 10.5LAAKK22 pKa = 10.25LSEE25 pKa = 4.09EE26 pKa = 4.2TGQKK30 pKa = 9.5IVATPEE36 pKa = 3.93PEE38 pKa = 5.2GIPSQPEE45 pKa = 4.18VKK47 pKa = 10.13RR48 pKa = 11.84LPRR51 pKa = 11.84TRR53 pKa = 11.84EE54 pKa = 3.05TWYY57 pKa = 10.28QRR59 pKa = 11.84WLTEE63 pKa = 3.68RR64 pKa = 11.84PQRR67 pKa = 11.84LRR69 pKa = 11.84AYY71 pKa = 10.28ASYY74 pKa = 10.8KK75 pKa = 9.63GGKK78 pKa = 6.74HH79 pKa = 5.03HH80 pKa = 7.21RR81 pKa = 11.84GVPAHH86 pKa = 6.74IQQQYY91 pKa = 7.95QFEE94 pKa = 4.73AEE96 pKa = 4.5VKK98 pKa = 10.46RR99 pKa = 11.84QGKK102 pKa = 7.92DD103 pKa = 2.6AKK105 pKa = 10.2RR106 pKa = 11.84ARR108 pKa = 11.84DD109 pKa = 3.6HH110 pKa = 7.59SLATYY115 pKa = 10.25NNPCLKK121 pKa = 10.67GG122 pKa = 3.41

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

89

0

89

23209

38

3442

260.8

28.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.358 ± 0.505

0.724 ± 0.136

6.092 ± 0.145

6.118 ± 0.228

3.494 ± 0.153

6.842 ± 0.301

1.784 ± 0.149

5.726 ± 0.262

5.494 ± 0.268

8.355 ± 0.213

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.766 ± 0.138

5.218 ± 0.146

4.149 ± 0.171

4.843 ± 0.259

5.162 ± 0.174

6.183 ± 0.15

6.411 ± 0.221

6.678 ± 0.237

1.314 ± 0.108

3.288 ± 0.157
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski