Salmonella phage BP63

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Rosemountvirus; Salmonella virus BP63

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 76 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140XG45|A0A140XG45_9CAUD Uncharacterized protein OS=Salmonella phage BP63 OX=1543205 GN=BP63_14 PE=4 SV=1
MM1 pKa = 7.75KK2 pKa = 10.36DD3 pKa = 4.96NYY5 pKa = 8.64TLWYY9 pKa = 9.75DD10 pKa = 3.63CNEE13 pKa = 4.18GLWCVNINNGPVPDD27 pKa = 4.48FEE29 pKa = 5.47SMDD32 pKa = 3.62VEE34 pKa = 4.45DD35 pKa = 5.59CVDD38 pKa = 4.94FIQSQVVKK46 pKa = 10.64YY47 pKa = 10.22QGG49 pKa = 2.92

Molecular weight: 5.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140XG57|A0A140XG57_9CAUD Uncharacterized protein OS=Salmonella phage BP63 OX=1543205 GN=BP63_26 PE=4 SV=1
MM1 pKa = 7.46IRR3 pKa = 11.84IRR5 pKa = 11.84LEE7 pKa = 3.74RR8 pKa = 11.84RR9 pKa = 11.84DD10 pKa = 3.51KK11 pKa = 11.14QKK13 pKa = 11.29FEE15 pKa = 3.54FTYY18 pKa = 10.47RR19 pKa = 11.84AFKK22 pKa = 10.7SFEE25 pKa = 4.05GQGVSVGVHH34 pKa = 6.16PEE36 pKa = 3.42HH37 pKa = 6.82NRR39 pKa = 11.84RR40 pKa = 11.84INPRR44 pKa = 11.84DD45 pKa = 3.53RR46 pKa = 11.84ITNAEE51 pKa = 3.92LAMVHH56 pKa = 6.6EE57 pKa = 4.93YY58 pKa = 11.07GLNGLPEE65 pKa = 4.16RR66 pKa = 11.84SFLRR70 pKa = 11.84SAVGGRR76 pKa = 11.84GKK78 pKa = 10.56GRR80 pKa = 11.84QAINKK85 pKa = 8.43AFRR88 pKa = 11.84DD89 pKa = 3.76NVPAVLRR96 pKa = 11.84GSMTAHH102 pKa = 7.02EE103 pKa = 5.17LNDD106 pKa = 3.9KK107 pKa = 9.75IGRR110 pKa = 11.84MLVDD114 pKa = 4.0AVHH117 pKa = 7.13DD118 pKa = 4.29RR119 pKa = 11.84MDD121 pKa = 4.21SDD123 pKa = 4.09VPPPNTEE130 pKa = 3.51LTEE133 pKa = 3.94EE134 pKa = 4.36RR135 pKa = 11.84KK136 pKa = 10.02RR137 pKa = 11.84GPGTLRR143 pKa = 11.84EE144 pKa = 4.05SMQLYY149 pKa = 10.63DD150 pKa = 3.76SIGYY154 pKa = 9.31KK155 pKa = 9.94VGRR158 pKa = 11.84NWRR161 pKa = 11.84LL162 pKa = 2.91

Molecular weight: 18.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

76

0

76

16248

37

985

213.8

23.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.303 ± 0.295

1.219 ± 0.11

6.425 ± 0.183

6.345 ± 0.281

3.422 ± 0.171

6.979 ± 0.238

1.68 ± 0.149

5.915 ± 0.181

6.112 ± 0.31

7.859 ± 0.256

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.8 ± 0.153

5.238 ± 0.206

4.228 ± 0.222

3.748 ± 0.2

4.641 ± 0.221

5.755 ± 0.279

6.419 ± 0.355

7.515 ± 0.36

1.662 ± 0.145

3.736 ± 0.237
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski