Avian-like circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; Tick associated circovirus 1

Average proteome isoelectric point is 7.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A172MHN5|A0A172MHN5_9CIRC ATP-dependent helicase Rep OS=Avian-like circovirus OX=1844928 PE=3 SV=1
MM1 pKa = 7.47PPVRR5 pKa = 11.84AAPAKK10 pKa = 9.69RR11 pKa = 11.84WCFTLNNPTDD21 pKa = 3.72EE22 pKa = 4.39EE23 pKa = 4.38VQKK26 pKa = 10.87IKK28 pKa = 11.16DD29 pKa = 3.82MNPSEE34 pKa = 4.01YY35 pKa = 10.16HH36 pKa = 4.82YY37 pKa = 10.93AIVGKK42 pKa = 10.07EE43 pKa = 3.83RR44 pKa = 11.84GEE46 pKa = 3.88QGTPHH51 pKa = 6.3LQGFLHH57 pKa = 6.5LKK59 pKa = 9.23CKK61 pKa = 10.31KK62 pKa = 10.1RR63 pKa = 11.84LNQLKK68 pKa = 9.89EE69 pKa = 4.03FLARR73 pKa = 11.84AHH75 pKa = 5.97WEE77 pKa = 3.8KK78 pKa = 11.15ARR80 pKa = 11.84GSDD83 pKa = 3.67EE84 pKa = 5.44DD85 pKa = 3.88NEE87 pKa = 4.7AYY89 pKa = 10.06CSKK92 pKa = 10.06EE93 pKa = 3.77GEE95 pKa = 4.45VILTLGMPAKK105 pKa = 10.49GNRR108 pKa = 11.84SDD110 pKa = 4.64LSGAVAAVKK119 pKa = 10.29AGRR122 pKa = 11.84AMSEE126 pKa = 3.74IARR129 pKa = 11.84EE130 pKa = 3.83FSEE133 pKa = 5.75VYY135 pKa = 10.0VKK137 pKa = 10.63YY138 pKa = 10.91GRR140 pKa = 11.84GLRR143 pKa = 11.84DD144 pKa = 3.22LALLIGQKK152 pKa = 10.21PRR154 pKa = 11.84DD155 pKa = 3.85FKK157 pKa = 11.14TDD159 pKa = 3.4VILITGPSGVGKK171 pKa = 10.22SRR173 pKa = 11.84WAFEE177 pKa = 4.16YY178 pKa = 10.24PGSKK182 pKa = 9.65FYY184 pKa = 11.33KK185 pKa = 9.9MKK187 pKa = 10.93GEE189 pKa = 3.76WWDD192 pKa = 3.97GYY194 pKa = 11.17ANEE197 pKa = 4.69DD198 pKa = 3.7VVVIDD203 pKa = 6.11DD204 pKa = 4.49FYY206 pKa = 11.67GWLPFCEE213 pKa = 4.47LLRR216 pKa = 11.84LTDD219 pKa = 4.49RR220 pKa = 11.84YY221 pKa = 8.43PHH223 pKa = 6.25KK224 pKa = 11.17VPVKK228 pKa = 9.5GSYY231 pKa = 10.41VEE233 pKa = 5.01FNSKK237 pKa = 9.4TIIITSNTHH246 pKa = 5.92PEE248 pKa = 3.23TWYY251 pKa = 11.11NEE253 pKa = 4.13EE254 pKa = 3.85KK255 pKa = 10.63CYY257 pKa = 10.72LQALFRR263 pKa = 11.84RR264 pKa = 11.84INKK267 pKa = 8.27WMFWDD272 pKa = 3.72AMRR275 pKa = 11.84FVDD278 pKa = 6.29APDD281 pKa = 3.72CVKK284 pKa = 10.6KK285 pKa = 11.1YY286 pKa = 9.74PINYY290 pKa = 9.36

Molecular weight: 33.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A172MHN5|A0A172MHN5_9CIRC ATP-dependent helicase Rep OS=Avian-like circovirus OX=1844928 PE=3 SV=1
MM1 pKa = 7.47PPVRR5 pKa = 11.84AAPAKK10 pKa = 9.69RR11 pKa = 11.84WCFTLNNPTDD21 pKa = 3.72EE22 pKa = 4.39EE23 pKa = 4.38VQKK26 pKa = 10.87IKK28 pKa = 11.16DD29 pKa = 3.82MNPSEE34 pKa = 4.01YY35 pKa = 10.16HH36 pKa = 4.82YY37 pKa = 10.93AIVGKK42 pKa = 10.07EE43 pKa = 3.83RR44 pKa = 11.84GEE46 pKa = 3.88QGTPHH51 pKa = 6.3LQGFLHH57 pKa = 6.5LKK59 pKa = 9.23CKK61 pKa = 10.31KK62 pKa = 10.1RR63 pKa = 11.84LNQLKK68 pKa = 9.89EE69 pKa = 4.03FLARR73 pKa = 11.84AHH75 pKa = 5.97WEE77 pKa = 3.8KK78 pKa = 11.15ARR80 pKa = 11.84GSDD83 pKa = 3.67EE84 pKa = 5.44DD85 pKa = 3.88NEE87 pKa = 4.7AYY89 pKa = 10.06CSKK92 pKa = 10.06EE93 pKa = 3.77GEE95 pKa = 4.45VILTLGMPAKK105 pKa = 10.49GNRR108 pKa = 11.84SDD110 pKa = 4.64LSGAVAAVKK119 pKa = 10.29AGRR122 pKa = 11.84AMSEE126 pKa = 3.74IARR129 pKa = 11.84EE130 pKa = 3.83FSEE133 pKa = 5.75VYY135 pKa = 10.0VKK137 pKa = 10.63YY138 pKa = 10.91GRR140 pKa = 11.84GLRR143 pKa = 11.84DD144 pKa = 3.22LALLIGQKK152 pKa = 10.21PRR154 pKa = 11.84DD155 pKa = 3.85FKK157 pKa = 11.14TDD159 pKa = 3.4VILITGPSGVGKK171 pKa = 10.22SRR173 pKa = 11.84WAFEE177 pKa = 4.16YY178 pKa = 10.24PGSKK182 pKa = 9.65FYY184 pKa = 11.33KK185 pKa = 9.9MKK187 pKa = 10.93GEE189 pKa = 3.76WWDD192 pKa = 3.97GYY194 pKa = 11.17ANEE197 pKa = 4.69DD198 pKa = 3.7VVVIDD203 pKa = 6.11DD204 pKa = 4.49FYY206 pKa = 11.67GWLPFCEE213 pKa = 4.47LLRR216 pKa = 11.84LTDD219 pKa = 4.49RR220 pKa = 11.84YY221 pKa = 8.43PHH223 pKa = 6.25KK224 pKa = 11.17VPVKK228 pKa = 9.5GSYY231 pKa = 10.41VEE233 pKa = 5.01FNSKK237 pKa = 9.4TIIITSNTHH246 pKa = 5.92PEE248 pKa = 3.23TWYY251 pKa = 11.11NEE253 pKa = 4.13EE254 pKa = 3.85KK255 pKa = 10.63CYY257 pKa = 10.72LQALFRR263 pKa = 11.84RR264 pKa = 11.84INKK267 pKa = 8.27WMFWDD272 pKa = 3.72AMRR275 pKa = 11.84FVDD278 pKa = 6.29APDD281 pKa = 3.72CVKK284 pKa = 10.6KK285 pKa = 11.1YY286 pKa = 9.74PINYY290 pKa = 9.36

Molecular weight: 33.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

290

290

290

290.0

33.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.241 ± 0.0

2.069 ± 0.0

5.517 ± 0.0

7.586 ± 0.0

4.483 ± 0.0

7.241 ± 0.0

2.069 ± 0.0

4.483 ± 0.0

8.966 ± 0.0

7.241 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.414 ± 0.0

4.138 ± 0.0

5.517 ± 0.0

2.069 ± 0.0

6.207 ± 0.0

4.483 ± 0.0

3.793 ± 0.0

6.207 ± 0.0

3.103 ± 0.0

5.172 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski