Hymenolepis diminuta (Rat tapeworm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Platyhelminthes; Cestoda; Eucestoda; Cyclophyllidea; Hymenolepididae; Hymenolepis

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11238 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R3SY24|A0A0R3SY24_HYMDI Anaphase-promoting complex subunit 11 OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS10667 PE=3 SV=1
MM1 pKa = 6.94IHH3 pKa = 6.74KK4 pKa = 10.49NYY6 pKa = 10.24VLEE9 pKa = 5.23NEE11 pKa = 4.51LEE13 pKa = 4.53SNGGSQCVTEE23 pKa = 4.34RR24 pKa = 11.84PEE26 pKa = 4.22LEE28 pKa = 3.91SCIDD32 pKa = 3.29IVQCLLQLDD41 pKa = 3.96IQFNPNLADD50 pKa = 3.85CLKK53 pKa = 10.57ACYY56 pKa = 10.08EE57 pKa = 4.15NTQTGHH63 pKa = 5.49VVDD66 pKa = 6.21PILEE70 pKa = 4.25TLAKK74 pKa = 9.63PAINSIVEE82 pKa = 4.92FITDD86 pKa = 4.69PIIDD90 pKa = 4.04TVNDD94 pKa = 3.61PTVDD98 pKa = 3.52LTTDD102 pKa = 3.38EE103 pKa = 5.46PIVHH107 pKa = 6.38PTVDD111 pKa = 3.39STTDD115 pKa = 3.43PVIDD119 pKa = 3.95QPVDD123 pKa = 3.82SITEE127 pKa = 4.03PVTAPNFEE135 pKa = 4.42TPINPTSEE143 pKa = 4.21TSEE146 pKa = 4.16SLTDD150 pKa = 3.43SKK152 pKa = 11.81VQFTSS157 pKa = 3.03

Molecular weight: 17.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P6ZXU4|A0A3P6ZXU4_HYMDI TOG domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS9869 PE=4 SV=1
MM1 pKa = 7.82LLEE4 pKa = 4.1QHH6 pKa = 6.41LHH8 pKa = 4.89HH9 pKa = 6.96HH10 pKa = 6.33LLILILLHH18 pKa = 5.28HH19 pKa = 6.51HH20 pKa = 7.21RR21 pKa = 11.84ILIHH25 pKa = 5.72LHH27 pKa = 5.55HH28 pKa = 6.76LRR30 pKa = 11.84ILILLHH36 pKa = 6.14HH37 pKa = 6.62LRR39 pKa = 11.84ILILLHH45 pKa = 6.51HH46 pKa = 6.83LLILILLHH54 pKa = 5.41HH55 pKa = 6.52HH56 pKa = 7.19RR57 pKa = 11.84ILILLHH63 pKa = 6.12HH64 pKa = 6.62LRR66 pKa = 11.84ILILLHH72 pKa = 6.02HH73 pKa = 6.61LRR75 pKa = 11.84ILIHH79 pKa = 5.83LHH81 pKa = 5.57HH82 pKa = 6.76LRR84 pKa = 11.84ILILLHH90 pKa = 6.02HH91 pKa = 6.61LRR93 pKa = 11.84ILIHH97 pKa = 5.83LHH99 pKa = 5.57HH100 pKa = 6.76LRR102 pKa = 11.84ILILLHH108 pKa = 6.14HH109 pKa = 6.62LRR111 pKa = 11.84ILILLHH117 pKa = 6.76HH118 pKa = 6.33IQILILLHH126 pKa = 6.5HH127 pKa = 6.86LLILILLHH135 pKa = 5.41HH136 pKa = 6.52HH137 pKa = 7.19RR138 pKa = 11.84ILILLHH144 pKa = 6.12HH145 pKa = 6.62LRR147 pKa = 11.84ILILLHH153 pKa = 5.23HH154 pKa = 6.51HH155 pKa = 7.19RR156 pKa = 11.84ILILLHH162 pKa = 6.12HH163 pKa = 6.62LRR165 pKa = 11.84ILILLHH171 pKa = 6.14HH172 pKa = 6.62LRR174 pKa = 11.84ILILLHH180 pKa = 5.23HH181 pKa = 6.51HH182 pKa = 7.19RR183 pKa = 11.84ILILLHH189 pKa = 6.12HH190 pKa = 6.62LRR192 pKa = 11.84ILILLHH198 pKa = 6.14HH199 pKa = 6.62LRR201 pKa = 11.84ILILLHH207 pKa = 6.1HH208 pKa = 6.81LRR210 pKa = 11.84IQILLHH216 pKa = 5.79HH217 pKa = 6.51LRR219 pKa = 11.84ILSLLHH225 pKa = 6.33HH226 pKa = 6.48LRR228 pKa = 11.84ILILLHH234 pKa = 6.41

Molecular weight: 28.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11237

1

11238

4879823

29

6786

434.2

48.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.559 ± 0.021

1.962 ± 0.018

5.21 ± 0.015

6.473 ± 0.03

4.126 ± 0.017

5.505 ± 0.031

2.3 ± 0.012

5.66 ± 0.018

5.36 ± 0.027

9.473 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.176 ± 0.009

4.719 ± 0.014

5.651 ± 0.028

4.079 ± 0.019

5.833 ± 0.019

9.326 ± 0.034

5.725 ± 0.017

5.98 ± 0.019

1.038 ± 0.008

2.843 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski