Begomovirus-associated alphasatellite sp.

Taxonomy: Viruses; Alphasatellitidae; Geminialphasatellitinae; Clecrusatellite; Capsicum India alphasatellite

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D0VPU0|A0A2D0VPU0_9VIRU Alpha rep OS=Begomovirus-associated alphasatellite sp. OX=1911908 GN=gp1 PE=4 SV=1
MM1 pKa = 6.56SQKK4 pKa = 10.6RR5 pKa = 11.84NWCFTIFNYY14 pKa = 9.97VLPLFTSLPDD24 pKa = 3.13WANYY28 pKa = 9.14IVYY31 pKa = 10.0QEE33 pKa = 4.46EE34 pKa = 4.35EE35 pKa = 4.22CPEE38 pKa = 4.25TKK40 pKa = 9.85RR41 pKa = 11.84KK42 pKa = 9.61HH43 pKa = 4.61IQGYY47 pKa = 9.73VNLKK51 pKa = 9.16RR52 pKa = 11.84PQRR55 pKa = 11.84FSFLKK60 pKa = 10.43KK61 pKa = 9.93KK62 pKa = 10.74LGDD65 pKa = 3.44GTHH68 pKa = 7.11IEE70 pKa = 4.22EE71 pKa = 4.76CRR73 pKa = 11.84GSASSNRR80 pKa = 11.84DD81 pKa = 3.15YY82 pKa = 10.47CTKK85 pKa = 10.47DD86 pKa = 2.88ASRR89 pKa = 11.84TGGPWEE95 pKa = 4.17FGVFCEE101 pKa = 4.38TGSNKK106 pKa = 9.76RR107 pKa = 11.84KK108 pKa = 7.94TMEE111 pKa = 4.3RR112 pKa = 11.84FQEE115 pKa = 4.28DD116 pKa = 4.08PEE118 pKa = 4.17EE119 pKa = 4.61LRR121 pKa = 11.84LADD124 pKa = 3.63PKK126 pKa = 10.93LYY128 pKa = 10.25RR129 pKa = 11.84RR130 pKa = 11.84CLATKK135 pKa = 10.02VNKK138 pKa = 9.79EE139 pKa = 3.67FSGLVLPIFDD149 pKa = 5.41RR150 pKa = 11.84PWQLVAQKK158 pKa = 10.46ILDD161 pKa = 3.67QGPDD165 pKa = 3.32DD166 pKa = 4.01RR167 pKa = 11.84TIIWVYY173 pKa = 10.5GSEE176 pKa = 4.1GNEE179 pKa = 4.89GKK181 pKa = 7.15TTWAKK186 pKa = 10.84KK187 pKa = 9.95KK188 pKa = 10.01IQEE191 pKa = 3.68GWFYY195 pKa = 11.47SRR197 pKa = 11.84GGKK200 pKa = 9.87GEE202 pKa = 4.13NIKK205 pKa = 10.35YY206 pKa = 10.12QYY208 pKa = 10.88AEE210 pKa = 4.16HH211 pKa = 6.98LGHH214 pKa = 6.82CVFDD218 pKa = 3.66IPRR221 pKa = 11.84QVEE224 pKa = 3.88DD225 pKa = 3.62CLQYY229 pKa = 10.81TVLEE233 pKa = 4.52EE234 pKa = 3.95IKK236 pKa = 10.78DD237 pKa = 3.69RR238 pKa = 11.84LIRR241 pKa = 11.84SSKK244 pKa = 10.56YY245 pKa = 10.02EE246 pKa = 4.51PIDD249 pKa = 3.78FNCSDD254 pKa = 3.56KK255 pKa = 11.13VHH257 pKa = 6.59VVICSNFLPCIEE269 pKa = 4.91LEE271 pKa = 4.2YY272 pKa = 10.91NNRR275 pKa = 11.84GEE277 pKa = 4.79LIKK280 pKa = 10.85KK281 pKa = 9.5PLLSRR286 pKa = 11.84DD287 pKa = 3.15RR288 pKa = 11.84VFLININEE296 pKa = 4.56SVCGHH301 pKa = 7.29PDD303 pKa = 3.47DD304 pKa = 4.95LTAFDD309 pKa = 5.53LYY311 pKa = 11.38LSLEE315 pKa = 4.15

Molecular weight: 36.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D0VPU0|A0A2D0VPU0_9VIRU Alpha rep OS=Begomovirus-associated alphasatellite sp. OX=1911908 GN=gp1 PE=4 SV=1
MM1 pKa = 6.56SQKK4 pKa = 10.6RR5 pKa = 11.84NWCFTIFNYY14 pKa = 9.97VLPLFTSLPDD24 pKa = 3.13WANYY28 pKa = 9.14IVYY31 pKa = 10.0QEE33 pKa = 4.46EE34 pKa = 4.35EE35 pKa = 4.22CPEE38 pKa = 4.25TKK40 pKa = 9.85RR41 pKa = 11.84KK42 pKa = 9.61HH43 pKa = 4.61IQGYY47 pKa = 9.73VNLKK51 pKa = 9.16RR52 pKa = 11.84PQRR55 pKa = 11.84FSFLKK60 pKa = 10.43KK61 pKa = 9.93KK62 pKa = 10.74LGDD65 pKa = 3.44GTHH68 pKa = 7.11IEE70 pKa = 4.22EE71 pKa = 4.76CRR73 pKa = 11.84GSASSNRR80 pKa = 11.84DD81 pKa = 3.15YY82 pKa = 10.47CTKK85 pKa = 10.47DD86 pKa = 2.88ASRR89 pKa = 11.84TGGPWEE95 pKa = 4.17FGVFCEE101 pKa = 4.38TGSNKK106 pKa = 9.76RR107 pKa = 11.84KK108 pKa = 7.94TMEE111 pKa = 4.3RR112 pKa = 11.84FQEE115 pKa = 4.28DD116 pKa = 4.08PEE118 pKa = 4.17EE119 pKa = 4.61LRR121 pKa = 11.84LADD124 pKa = 3.63PKK126 pKa = 10.93LYY128 pKa = 10.25RR129 pKa = 11.84RR130 pKa = 11.84CLATKK135 pKa = 10.02VNKK138 pKa = 9.79EE139 pKa = 3.67FSGLVLPIFDD149 pKa = 5.41RR150 pKa = 11.84PWQLVAQKK158 pKa = 10.46ILDD161 pKa = 3.67QGPDD165 pKa = 3.32DD166 pKa = 4.01RR167 pKa = 11.84TIIWVYY173 pKa = 10.5GSEE176 pKa = 4.1GNEE179 pKa = 4.89GKK181 pKa = 7.15TTWAKK186 pKa = 10.84KK187 pKa = 9.95KK188 pKa = 10.01IQEE191 pKa = 3.68GWFYY195 pKa = 11.47SRR197 pKa = 11.84GGKK200 pKa = 9.87GEE202 pKa = 4.13NIKK205 pKa = 10.35YY206 pKa = 10.12QYY208 pKa = 10.88AEE210 pKa = 4.16HH211 pKa = 6.98LGHH214 pKa = 6.82CVFDD218 pKa = 3.66IPRR221 pKa = 11.84QVEE224 pKa = 3.88DD225 pKa = 3.62CLQYY229 pKa = 10.81TVLEE233 pKa = 4.52EE234 pKa = 3.95IKK236 pKa = 10.78DD237 pKa = 3.69RR238 pKa = 11.84LIRR241 pKa = 11.84SSKK244 pKa = 10.56YY245 pKa = 10.02EE246 pKa = 4.51PIDD249 pKa = 3.78FNCSDD254 pKa = 3.56KK255 pKa = 11.13VHH257 pKa = 6.59VVICSNFLPCIEE269 pKa = 4.91LEE271 pKa = 4.2YY272 pKa = 10.91NNRR275 pKa = 11.84GEE277 pKa = 4.79LIKK280 pKa = 10.85KK281 pKa = 9.5PLLSRR286 pKa = 11.84DD287 pKa = 3.15RR288 pKa = 11.84VFLININEE296 pKa = 4.56SVCGHH301 pKa = 7.29PDD303 pKa = 3.47DD304 pKa = 4.95LTAFDD309 pKa = 5.53LYY311 pKa = 11.38LSLEE315 pKa = 4.15

Molecular weight: 36.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

315

315

315

315.0

36.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.857 ± 0.0

3.81 ± 0.0

6.032 ± 0.0

8.571 ± 0.0

5.079 ± 0.0

6.349 ± 0.0

1.905 ± 0.0

6.032 ± 0.0

7.937 ± 0.0

8.889 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

0.635 ± 0.0

4.762 ± 0.0

4.762 ± 0.0

3.81 ± 0.0

6.667 ± 0.0

5.714 ± 0.0

4.444 ± 0.0

5.079 ± 0.0

2.222 ± 0.0

4.444 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski