Arthrobacter phage Corgi

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G2KF04|A0A3G2KF04_9CAUD Head-to-tail adaptor OS=Arthrobacter phage Corgi OX=2419952 GN=8 PE=4 SV=1
MM1 pKa = 7.83PATTNRR7 pKa = 11.84DD8 pKa = 2.95YY9 pKa = 10.59RR10 pKa = 11.84YY11 pKa = 9.02PGAGVEE17 pKa = 4.11PDD19 pKa = 3.5VNGDD23 pKa = 3.39IQRR26 pKa = 11.84LAEE29 pKa = 4.86DD30 pKa = 3.51VDD32 pKa = 4.32ADD34 pKa = 3.64MDD36 pKa = 3.8ATLAALAKK44 pKa = 10.41LPGRR48 pKa = 11.84IQTGSATISIGSAVASATQVITFPVAFASAPNVFLQSTANVAGRR92 pKa = 11.84ASLLSLYY99 pKa = 10.96VNATTATQFTCKK111 pKa = 9.47MQTADD116 pKa = 3.58NANTGTSYY124 pKa = 11.24AIAYY128 pKa = 8.62NWIAVLL134 pKa = 4.17

Molecular weight: 13.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G2KF60|A0A3G2KF60_9CAUD Membrane protein OS=Arthrobacter phage Corgi OX=2419952 GN=17 PE=4 SV=1
MM1 pKa = 7.68ARR3 pKa = 11.84RR4 pKa = 11.84PAPPQGQLFRR14 pKa = 11.84MDD16 pKa = 4.01PVQVPGQDD24 pKa = 2.89GHH26 pKa = 6.73RR27 pKa = 11.84AKK29 pKa = 10.51KK30 pKa = 8.42WGGRR34 pKa = 11.84KK35 pKa = 7.96VAKK38 pKa = 10.56ARR40 pKa = 11.84DD41 pKa = 3.79TVRR44 pKa = 11.84AMLPAACWRR53 pKa = 11.84GCGRR57 pKa = 11.84MITRR61 pKa = 11.84DD62 pKa = 3.3WPEE65 pKa = 4.02KK66 pKa = 9.72DD67 pKa = 2.53WHH69 pKa = 6.42AGHH72 pKa = 6.43VNGRR76 pKa = 11.84AEE78 pKa = 4.35GGPDD82 pKa = 3.01NVTNYY87 pKa = 10.32LPEE90 pKa = 4.46CRR92 pKa = 11.84WCNLSEE98 pKa = 4.2GGKK101 pKa = 10.04VGAAITNGKK110 pKa = 9.1RR111 pKa = 11.84VAITTDD117 pKa = 4.13AIRR120 pKa = 11.84EE121 pKa = 4.15RR122 pKa = 11.84TLKK125 pKa = 10.0WYY127 pKa = 10.34

Molecular weight: 14.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26

0

26

5037

48

555

193.7

20.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.989 ± 0.704

0.596 ± 0.174

6.79 ± 0.471

4.963 ± 0.448

2.104 ± 0.162

8.795 ± 0.335

1.37 ± 0.19

3.176 ± 0.304

3.633 ± 0.464

8.537 ± 0.589

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.363 ± 0.19

2.918 ± 0.308

5.122 ± 0.523

3.871 ± 0.324

6.75 ± 0.51

4.864 ± 0.43

7.227 ± 0.415

7.504 ± 0.547

2.005 ± 0.254

2.422 ± 0.377
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski