Amino acid dipepetide frequency for Mulberry badnavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.837AlaAla: 2.837 ± 1.132
1.418AlaCys: 1.418 ± 0.566
1.418AlaAsp: 1.418 ± 0.566
4.255AlaGlu: 4.255 ± 1.727
2.837AlaPhe: 2.837 ± 1.132
0.946AlaGly: 0.946 ± 0.377
0.0AlaHis: 0.0 ± 0.0
4.728AlaIle: 4.728 ± 4.962
5.674AlaLys: 5.674 ± 4.585
5.674AlaLeu: 5.674 ± 4.585
2.364AlaMet: 2.364 ± 0.943
1.418AlaAsn: 1.418 ± 2.858
2.837AlaPro: 2.837 ± 1.132
2.837AlaGln: 2.837 ± 1.132
3.783AlaArg: 3.783 ± 1.509
2.837AlaSer: 2.837 ± 1.132
2.837AlaThr: 2.837 ± 2.292
3.31AlaVal: 3.31 ± 1.32
0.0AlaTrp: 0.0 ± 0.0
4.255AlaTyr: 4.255 ± 5.151
0.0AlaXaa: 0.0 ± 0.0
Cys
0.946CysAla: 0.946 ± 3.047
0.946CysCys: 0.946 ± 0.377
1.418CysAsp: 1.418 ± 0.566
0.473CysGlu: 0.473 ± 0.189
0.473CysPhe: 0.473 ± 0.189
1.418CysGly: 1.418 ± 0.566
1.418CysHis: 1.418 ± 0.566
0.473CysIle: 0.473 ± 0.189
2.364CysLys: 2.364 ± 0.943
0.473CysLeu: 0.473 ± 0.189
0.473CysMet: 0.473 ± 0.189
0.946CysAsn: 0.946 ± 0.377
0.473CysPro: 0.473 ± 0.189
0.473CysGln: 0.473 ± 0.189
0.946CysArg: 0.946 ± 0.377
0.946CysSer: 0.946 ± 0.377
1.891CysThr: 1.891 ± 2.67
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.946CysTyr: 0.946 ± 0.377
0.0CysXaa: 0.0 ± 0.0
Asp
2.837AspAla: 2.837 ± 1.132
0.946AspCys: 0.946 ± 0.377
2.364AspAsp: 2.364 ± 2.481
7.565AspGlu: 7.565 ± 0.406
3.31AspPhe: 3.31 ± 1.32
1.891AspGly: 1.891 ± 0.754
1.418AspHis: 1.418 ± 0.566
3.31AspIle: 3.31 ± 1.32
2.837AspLys: 2.837 ± 1.132
6.619AspLeu: 6.619 ± 4.208
0.0AspMet: 0.0 ± 0.0
1.418AspAsn: 1.418 ± 2.858
3.783AspPro: 3.783 ± 1.509
2.837AspGln: 2.837 ± 2.292
4.255AspArg: 4.255 ± 5.151
0.946AspSer: 0.946 ± 3.047
1.891AspThr: 1.891 ± 0.754
1.418AspVal: 1.418 ± 0.566
0.0AspTrp: 0.0 ± 0.0
2.364AspTyr: 2.364 ± 0.943
0.0AspXaa: 0.0 ± 0.0
Glu
5.674GluAla: 5.674 ± 1.161
0.473GluCys: 0.473 ± 0.189
5.674GluAsp: 5.674 ± 2.263
16.548GluGlu: 16.548 ± 6.601
1.891GluPhe: 1.891 ± 0.754
6.147GluGly: 6.147 ± 2.452
2.364GluHis: 2.364 ± 2.481
4.728GluIle: 4.728 ± 1.886
6.619GluLys: 6.619 ± 2.64
6.147GluLeu: 6.147 ± 4.396
1.418GluMet: 1.418 ± 1.074
3.783GluAsn: 3.783 ± 1.915
4.728GluPro: 4.728 ± 1.886
4.255GluGln: 4.255 ± 5.151
7.565GluArg: 7.565 ± 3.018
5.201GluSer: 5.201 ± 1.349
4.255GluThr: 4.255 ± 1.697
6.619GluVal: 6.619 ± 2.64
1.891GluTrp: 1.891 ± 0.754
1.891GluTyr: 1.891 ± 0.754
0.0GluXaa: 0.0 ± 0.0
Phe
3.31PheAla: 3.31 ± 1.32
1.418PheCys: 1.418 ± 0.566
1.891PheAsp: 1.891 ± 0.754
0.946PheGlu: 0.946 ± 0.377
0.0PhePhe: 0.0 ± 0.0
0.473PheGly: 0.473 ± 0.189
0.946PheHis: 0.946 ± 0.377
3.31PheIle: 3.31 ± 1.32
1.418PheLys: 1.418 ± 0.566
1.891PheLeu: 1.891 ± 0.754
0.473PheMet: 0.473 ± 0.189
1.418PheAsn: 1.418 ± 0.566
0.0PhePro: 0.0 ± 0.0
1.418PheGln: 1.418 ± 0.566
1.418PheArg: 1.418 ± 0.566
2.837PheSer: 2.837 ± 1.132
2.364PheThr: 2.364 ± 0.943
1.891PheVal: 1.891 ± 0.754
0.473PheTrp: 0.473 ± 0.189
0.473PheTyr: 0.473 ± 0.189
0.0PheXaa: 0.0 ± 0.0
Gly
2.364GlyAla: 2.364 ± 2.481
1.418GlyCys: 1.418 ± 0.566
2.364GlyAsp: 2.364 ± 2.481
5.674GlyGlu: 5.674 ± 2.263
1.891GlyPhe: 1.891 ± 0.754
2.364GlyGly: 2.364 ± 2.481
0.946GlyHis: 0.946 ± 0.377
2.364GlyIle: 2.364 ± 0.943
6.147GlyLys: 6.147 ± 0.972
5.201GlyLeu: 5.201 ± 2.075
2.364GlyMet: 2.364 ± 2.481
0.0GlyAsn: 0.0 ± 0.0
1.418GlyPro: 1.418 ± 0.566
0.946GlyGln: 0.946 ± 0.377
3.783GlyArg: 3.783 ± 1.509
4.255GlySer: 4.255 ± 1.697
2.837GlyThr: 2.837 ± 1.132
4.255GlyVal: 4.255 ± 1.697
0.946GlyTrp: 0.946 ± 0.377
2.364GlyTyr: 2.364 ± 0.943
0.0GlyXaa: 0.0 ± 0.0
His
1.418HisAla: 1.418 ± 2.858
1.418HisCys: 1.418 ± 0.566
0.946HisAsp: 0.946 ± 0.377
2.364HisGlu: 2.364 ± 0.943
0.946HisPhe: 0.946 ± 0.377
0.473HisGly: 0.473 ± 0.189
0.473HisHis: 0.473 ± 0.189
2.837HisIle: 2.837 ± 1.132
0.946HisLys: 0.946 ± 0.377
2.837HisLeu: 2.837 ± 1.132
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
0.946HisPro: 0.946 ± 0.377
0.946HisGln: 0.946 ± 0.377
2.364HisArg: 2.364 ± 2.481
1.418HisSer: 1.418 ± 0.566
0.0HisThr: 0.0 ± 0.0
0.473HisVal: 0.473 ± 0.189
0.473HisTrp: 0.473 ± 0.189
0.473HisTyr: 0.473 ± 0.189
0.0HisXaa: 0.0 ± 0.0
Ile
3.31IleAla: 3.31 ± 1.32
0.473IleCys: 0.473 ± 0.189
5.674IleAsp: 5.674 ± 2.263
5.201IleGlu: 5.201 ± 2.075
1.891IlePhe: 1.891 ± 0.754
3.783IleGly: 3.783 ± 1.509
1.418IleHis: 1.418 ± 0.566
5.201IleIle: 5.201 ± 2.075
4.728IleLys: 4.728 ± 1.886
3.783IleLeu: 3.783 ± 1.509
0.0IleMet: 0.0 ± 0.0
1.891IleAsn: 1.891 ± 2.67
4.728IlePro: 4.728 ± 1.886
5.674IleGln: 5.674 ± 2.263
6.147IleArg: 6.147 ± 4.396
3.31IleSer: 3.31 ± 1.32
3.31IleThr: 3.31 ± 1.32
3.783IleVal: 3.783 ± 1.509
0.0IleTrp: 0.0 ± 0.0
0.946IleTyr: 0.946 ± 0.377
0.0IleXaa: 0.0 ± 0.0
Lys
2.837LysAla: 2.837 ± 2.292
2.364LysCys: 2.364 ± 0.943
2.364LysAsp: 2.364 ± 0.943
8.983LysGlu: 8.983 ± 3.583
1.418LysPhe: 1.418 ± 0.566
3.783LysGly: 3.783 ± 1.509
1.418LysHis: 1.418 ± 0.566
5.201LysIle: 5.201 ± 2.075
3.31LysLys: 3.31 ± 1.32
4.728LysLeu: 4.728 ± 1.886
4.255LysMet: 4.255 ± 5.151
2.837LysAsn: 2.837 ± 1.132
3.31LysPro: 3.31 ± 1.32
2.364LysGln: 2.364 ± 2.481
3.783LysArg: 3.783 ± 1.509
3.783LysSer: 3.783 ± 1.509
3.31LysThr: 3.31 ± 1.32
2.364LysVal: 2.364 ± 0.943
0.946LysTrp: 0.946 ± 0.377
2.364LysTyr: 2.364 ± 0.943
0.0LysXaa: 0.0 ± 0.0
Leu
3.31LeuAla: 3.31 ± 1.32
0.473LeuCys: 0.473 ± 0.189
3.31LeuAsp: 3.31 ± 2.104
5.674LeuGlu: 5.674 ± 1.161
1.418LeuPhe: 1.418 ± 0.566
5.674LeuGly: 5.674 ± 1.161
0.473LeuHis: 0.473 ± 0.189
6.619LeuIle: 6.619 ± 0.784
5.674LeuLys: 5.674 ± 2.263
8.511LeuLeu: 8.511 ± 0.029
0.473LeuMet: 0.473 ± 0.208
3.783LeuAsn: 3.783 ± 1.509
3.783LeuPro: 3.783 ± 1.915
7.092LeuGln: 7.092 ± 4.019
4.255LeuArg: 4.255 ± 1.727
5.201LeuSer: 5.201 ± 1.349
6.147LeuThr: 6.147 ± 4.396
4.255LeuVal: 4.255 ± 1.697
0.946LeuTrp: 0.946 ± 0.377
4.255LeuTyr: 4.255 ± 1.727
0.0LeuXaa: 0.0 ± 0.0
Met
1.418MetAla: 1.418 ± 2.858
0.473MetCys: 0.473 ± 0.189
0.946MetAsp: 0.946 ± 0.377
2.364MetGlu: 2.364 ± 2.481
1.418MetPhe: 1.418 ± 0.566
0.473MetGly: 0.473 ± 0.189
0.473MetHis: 0.473 ± 0.189
0.0MetIle: 0.0 ± 0.0
1.418MetLys: 1.418 ± 0.566
1.891MetLeu: 1.891 ± 2.67
0.946MetMet: 0.946 ± 0.377
2.364MetAsn: 2.364 ± 0.943
2.837MetPro: 2.837 ± 2.292
0.946MetGln: 0.946 ± 0.377
0.473MetArg: 0.473 ± 0.189
1.418MetSer: 1.418 ± 0.566
1.891MetThr: 1.891 ± 2.67
1.418MetVal: 1.418 ± 0.566
0.0MetTrp: 0.0 ± 0.0
0.946MetTyr: 0.946 ± 0.377
0.0MetXaa: 0.0 ± 0.0
Asn
2.837AsnAla: 2.837 ± 1.132
1.418AsnCys: 1.418 ± 0.566
1.418AsnAsp: 1.418 ± 0.566
2.364AsnGlu: 2.364 ± 2.481
0.473AsnPhe: 0.473 ± 0.189
1.891AsnGly: 1.891 ± 0.754
1.418AsnHis: 1.418 ± 0.566
1.891AsnIle: 1.891 ± 0.754
1.891AsnLys: 1.891 ± 0.754
3.31AsnLeu: 3.31 ± 1.32
0.0AsnMet: 0.0 ± 0.0
1.418AsnAsn: 1.418 ± 0.566
1.891AsnPro: 1.891 ± 0.754
4.255AsnGln: 4.255 ± 8.575
2.364AsnArg: 2.364 ± 0.943
4.255AsnSer: 4.255 ± 1.697
3.31AsnThr: 3.31 ± 1.32
2.837AsnVal: 2.837 ± 2.292
0.473AsnTrp: 0.473 ± 0.189
2.364AsnTyr: 2.364 ± 0.943
0.0AsnXaa: 0.0 ± 0.0
Pro
5.201ProAla: 5.201 ± 2.075
0.473ProCys: 0.473 ± 0.189
1.418ProAsp: 1.418 ± 0.566
5.201ProGlu: 5.201 ± 2.075
0.473ProPhe: 0.473 ± 0.189
3.783ProGly: 3.783 ± 1.509
1.418ProHis: 1.418 ± 0.566
1.891ProIle: 1.891 ± 0.754
0.946ProLys: 0.946 ± 0.377
3.783ProLeu: 3.783 ± 5.339
0.473ProMet: 0.473 ± 0.189
2.364ProAsn: 2.364 ± 0.943
3.783ProPro: 3.783 ± 1.509
2.364ProGln: 2.364 ± 0.943
3.783ProArg: 3.783 ± 1.509
2.364ProSer: 2.364 ± 0.943
1.891ProThr: 1.891 ± 2.67
3.783ProVal: 3.783 ± 1.509
1.418ProTrp: 1.418 ± 0.566
2.364ProTyr: 2.364 ± 0.943
0.0ProXaa: 0.0 ± 0.0
Gln
2.364GlnAla: 2.364 ± 5.905
0.473GlnCys: 0.473 ± 0.189
3.31GlnAsp: 3.31 ± 2.104
8.983GlnGlu: 8.983 ± 3.265
0.473GlnPhe: 0.473 ± 0.189
2.837GlnGly: 2.837 ± 2.292
0.946GlnHis: 0.946 ± 0.377
3.783GlnIle: 3.783 ± 1.509
3.31GlnLys: 3.31 ± 1.32
3.783GlnLeu: 3.783 ± 5.339
1.418GlnMet: 1.418 ± 0.566
3.783GlnAsn: 3.783 ± 1.509
3.31GlnPro: 3.31 ± 2.104
1.418GlnGln: 1.418 ± 0.566
1.891GlnArg: 1.891 ± 0.754
4.255GlnSer: 4.255 ± 1.697
2.364GlnThr: 2.364 ± 2.481
0.946GlnVal: 0.946 ± 0.377
0.0GlnTrp: 0.0 ± 0.0
2.364GlnTyr: 2.364 ± 2.481
0.0GlnXaa: 0.0 ± 0.0
Arg
3.31ArgAla: 3.31 ± 5.528
0.473ArgCys: 0.473 ± 3.235
5.201ArgAsp: 5.201 ± 8.197
4.728ArgGlu: 4.728 ± 1.538
2.364ArgPhe: 2.364 ± 0.943
1.418ArgGly: 1.418 ± 0.566
0.946ArgHis: 0.946 ± 0.377
4.255ArgIle: 4.255 ± 1.697
2.837ArgLys: 2.837 ± 1.132
6.619ArgLeu: 6.619 ± 2.64
2.364ArgMet: 2.364 ± 0.943
3.31ArgAsn: 3.31 ± 1.32
2.837ArgPro: 2.837 ± 1.132
3.31ArgGln: 3.31 ± 2.104
6.619ArgArg: 6.619 ± 0.784
6.147ArgSer: 6.147 ± 0.972
4.255ArgThr: 4.255 ± 1.697
5.674ArgVal: 5.674 ± 2.263
1.891ArgTrp: 1.891 ± 0.754
1.418ArgTyr: 1.418 ± 2.858
0.0ArgXaa: 0.0 ± 0.0
Ser
3.31SerAla: 3.31 ± 1.32
0.0SerCys: 0.0 ± 0.0
5.201SerAsp: 5.201 ± 2.075
2.837SerGlu: 2.837 ± 1.132
2.837SerPhe: 2.837 ± 1.132
3.783SerGly: 3.783 ± 1.509
0.473SerHis: 0.473 ± 0.189
4.728SerIle: 4.728 ± 1.886
4.255SerLys: 4.255 ± 1.697
4.255SerLeu: 4.255 ± 1.727
1.891SerMet: 1.891 ± 0.754
2.364SerAsn: 2.364 ± 0.943
1.891SerPro: 1.891 ± 0.754
3.31SerGln: 3.31 ± 1.32
6.619SerArg: 6.619 ± 4.208
4.728SerSer: 4.728 ± 1.538
4.255SerThr: 4.255 ± 1.697
1.891SerVal: 1.891 ± 2.67
2.364SerTrp: 2.364 ± 2.481
1.418SerTyr: 1.418 ± 0.566
0.0SerXaa: 0.0 ± 0.0
Thr
1.891ThrAla: 1.891 ± 0.754
0.0ThrCys: 0.0 ± 0.0
2.364ThrAsp: 2.364 ± 2.481
5.674ThrGlu: 5.674 ± 2.263
1.418ThrPhe: 1.418 ± 0.566
7.565ThrGly: 7.565 ± 0.406
2.837ThrHis: 2.837 ± 2.292
1.891ThrIle: 1.891 ± 0.754
3.31ThrLys: 3.31 ± 2.104
3.31ThrLeu: 3.31 ± 1.32
2.364ThrMet: 2.364 ± 2.481
1.891ThrAsn: 1.891 ± 0.754
1.891ThrPro: 1.891 ± 0.754
0.946ThrGln: 0.946 ± 0.377
4.728ThrArg: 4.728 ± 4.962
1.891ThrSer: 1.891 ± 0.754
1.891ThrThr: 1.891 ± 2.67
6.147ThrVal: 6.147 ± 2.452
0.0ThrTrp: 0.0 ± 0.0
2.364ThrTyr: 2.364 ± 0.943
0.0ThrXaa: 0.0 ± 0.0
Val
3.783ValAla: 3.783 ± 1.509
1.891ValCys: 1.891 ± 0.754
2.837ValAsp: 2.837 ± 2.292
4.255ValGlu: 4.255 ± 1.697
2.364ValPhe: 2.364 ± 0.943
1.891ValGly: 1.891 ± 0.754
2.364ValHis: 2.364 ± 0.943
4.255ValIle: 4.255 ± 1.697
4.255ValLys: 4.255 ± 1.697
4.255ValLeu: 4.255 ± 1.697
1.418ValMet: 1.418 ± 0.566
2.364ValAsn: 2.364 ± 0.943
2.364ValPro: 2.364 ± 0.943
3.783ValGln: 3.783 ± 1.509
2.837ValArg: 2.837 ± 1.132
3.31ValSer: 3.31 ± 1.32
2.837ValThr: 2.837 ± 1.132
0.473ValVal: 0.473 ± 0.189
0.946ValTrp: 0.946 ± 0.377
1.891ValTyr: 1.891 ± 2.67
0.0ValXaa: 0.0 ± 0.0
Trp
0.473TrpAla: 0.473 ± 0.189
0.0TrpCys: 0.0 ± 0.0
0.946TrpAsp: 0.946 ± 0.377
1.891TrpGlu: 1.891 ± 2.67
0.0TrpPhe: 0.0 ± 0.0
0.946TrpGly: 0.946 ± 0.377
0.0TrpHis: 0.0 ± 0.0
1.418TrpIle: 1.418 ± 0.566
0.946TrpLys: 0.946 ± 0.377
0.946TrpLeu: 0.946 ± 0.377
0.473TrpMet: 0.473 ± 0.189
1.891TrpAsn: 1.891 ± 2.67
0.473TrpPro: 0.473 ± 0.189
0.946TrpGln: 0.946 ± 0.377
0.473TrpArg: 0.473 ± 0.189
0.473TrpSer: 0.473 ± 0.189
1.891TrpThr: 1.891 ± 0.754
0.946TrpVal: 0.946 ± 0.377
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.837TyrAla: 2.837 ± 2.292
0.946TyrCys: 0.946 ± 3.047
0.946TyrAsp: 0.946 ± 0.377
2.364TyrGlu: 2.364 ± 0.943
0.473TyrPhe: 0.473 ± 0.189
2.364TyrGly: 2.364 ± 2.481
0.0TyrHis: 0.0 ± 0.0
2.364TyrIle: 2.364 ± 0.943
2.837TyrLys: 2.837 ± 1.132
3.31TyrLeu: 3.31 ± 1.32
0.473TyrMet: 0.473 ± 0.189
2.837TyrAsn: 2.837 ± 1.132
1.891TyrPro: 1.891 ± 0.754
1.891TyrGln: 1.891 ± 2.67
1.891TyrArg: 1.891 ± 0.754
2.837TyrSer: 2.837 ± 2.292
0.946TyrThr: 0.946 ± 0.377
1.891TyrVal: 1.891 ± 0.754
2.364TyrTrp: 2.364 ± 2.481
0.946TyrTyr: 0.946 ± 0.377
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2116 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski