Phytohabitans flavus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Phytohabitans

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9064 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6F8Y4D7|A0A6F8Y4D7_9ACTN Uncharacterized protein OS=Phytohabitans flavus OX=1076124 GN=Pflav_073030 PE=4 SV=1
MM1 pKa = 7.86SEE3 pKa = 4.59FDD5 pKa = 5.56DD6 pKa = 4.04PTLTEE11 pKa = 4.7DD12 pKa = 3.99PGTGHH17 pKa = 6.87EE18 pKa = 4.58GFGNAGDD25 pKa = 4.5SGHH28 pKa = 6.94DD29 pKa = 3.35QPGYY33 pKa = 10.04DD34 pKa = 4.83QPGHH38 pKa = 6.13DD39 pKa = 4.14QPPYY43 pKa = 10.85GHH45 pKa = 7.13DD46 pKa = 3.18QPHH49 pKa = 6.28YY50 pKa = 9.4EE51 pKa = 4.26EE52 pKa = 4.32PHH54 pKa = 5.77YY55 pKa = 10.18GQPDD59 pKa = 4.03SIVQHH64 pKa = 6.27NPDD67 pKa = 3.57GSTDD71 pKa = 3.55TVVDD75 pKa = 4.59LDD77 pKa = 3.78GDD79 pKa = 4.24GYY81 pKa = 11.67ADD83 pKa = 3.76VVKK86 pKa = 10.62HH87 pKa = 5.92DD88 pKa = 4.27TDD90 pKa = 3.75SDD92 pKa = 4.37GYY94 pKa = 11.73ADD96 pKa = 3.78TTYY99 pKa = 11.25VDD101 pKa = 3.84ANHH104 pKa = 7.41DD105 pKa = 3.71GRR107 pKa = 11.84LDD109 pKa = 4.11TILKK113 pKa = 10.57DD114 pKa = 3.71YY115 pKa = 11.36DD116 pKa = 4.09DD117 pKa = 6.47DD118 pKa = 6.58GDD120 pKa = 4.29LDD122 pKa = 4.31AAFADD127 pKa = 4.28TNADD131 pKa = 3.06GRR133 pKa = 11.84VDD135 pKa = 3.53YY136 pKa = 10.95AAADD140 pKa = 3.96LNDD143 pKa = 4.31DD144 pKa = 3.87NKK146 pKa = 10.36VDD148 pKa = 4.43HH149 pKa = 6.38VTLDD153 pKa = 3.05TDD155 pKa = 4.03YY156 pKa = 11.57DD157 pKa = 4.02GKK159 pKa = 11.07ADD161 pKa = 3.43TWIADD166 pKa = 3.24VDD168 pKa = 4.09YY169 pKa = 11.27DD170 pKa = 4.04GQPDD174 pKa = 3.77VAFVDD179 pKa = 4.31TNHH182 pKa = 7.44DD183 pKa = 3.64GTPDD187 pKa = 3.5VAVSDD192 pKa = 4.51ANHH195 pKa = 7.31DD196 pKa = 3.88GTPEE200 pKa = 3.89QQTAAPQTVTPPPPVNPYY218 pKa = 9.87AASS221 pKa = 3.26

Molecular weight: 23.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6F8Y4C5|A0A6F8Y4C5_9ACTN Uncharacterized protein OS=Phytohabitans flavus OX=1076124 GN=Pflav_073760 PE=4 SV=1
MM1 pKa = 7.69PAAQPRR7 pKa = 11.84LPVAHH12 pKa = 7.25LAGPSLLAARR22 pKa = 11.84MPVVRR27 pKa = 11.84VRR29 pKa = 11.84LLVAHH34 pKa = 7.09LAGLSLPVPRR44 pKa = 11.84TPVARR49 pKa = 11.84VRR51 pKa = 11.84LSVVHH56 pKa = 6.54LVGLSLLAARR66 pKa = 11.84MPAARR71 pKa = 11.84VRR73 pKa = 11.84LLAVPLSGAWLARR86 pKa = 11.84VVAPAVV92 pKa = 3.25

Molecular weight: 9.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9064

0

9064

2839989

39

6022

313.3

33.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.947 ± 0.041

0.773 ± 0.008

5.951 ± 0.021

5.155 ± 0.022

2.756 ± 0.016

9.281 ± 0.025

2.09 ± 0.012

3.388 ± 0.018

1.738 ± 0.016

10.19 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.727 ± 0.01

1.872 ± 0.018

6.268 ± 0.021

2.779 ± 0.014

8.257 ± 0.032

5.113 ± 0.023

6.096 ± 0.025

8.84 ± 0.024

1.64 ± 0.012

2.139 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski