Atractylodes mild mottle virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A0M5K7P9|A0A0M5K7P9_9VIRU Protein 3 OS=Atractylodes mild mottle virus OX=1711685 PE=3 SV=1
MM1 pKa = 7.14TNYY4 pKa = 8.5MRR6 pKa = 11.84NVEE9 pKa = 4.15KK10 pKa = 10.66FFYY13 pKa = 10.72DD14 pKa = 3.18KK15 pKa = 11.38FEE17 pKa = 6.04DD18 pKa = 3.98DD19 pKa = 5.98LEE21 pKa = 4.57VTDD24 pKa = 4.44EE25 pKa = 4.33NYY27 pKa = 10.57HH28 pKa = 5.98ILNHH32 pKa = 5.8TLMLMDD38 pKa = 5.28MEE40 pKa = 5.79NEE42 pKa = 3.97DD43 pKa = 4.22DD44 pKa = 3.99ANSIIEE50 pKa = 4.51NDD52 pKa = 3.62PEE54 pKa = 4.15LKK56 pKa = 10.55KK57 pKa = 11.07FFGHH61 pKa = 7.4PDD63 pKa = 3.46PEE65 pKa = 4.3NLFVLGDD72 pKa = 3.88EE73 pKa = 5.31EE74 pKa = 4.54VSEE77 pKa = 4.41WNTEE81 pKa = 4.06SEE83 pKa = 4.64SEE85 pKa = 3.89FDD87 pKa = 4.98EE88 pKa = 5.88LIQDD92 pKa = 3.61EE93 pKa = 4.87PPRR96 pKa = 11.84KK97 pKa = 9.57KK98 pKa = 9.66PSEE101 pKa = 4.3RR102 pKa = 11.84IFPDD106 pKa = 2.94QQMIDD111 pKa = 3.74AYY113 pKa = 10.47AQSSYY118 pKa = 10.69TNPRR122 pKa = 11.84THH124 pKa = 6.41PTAYY128 pKa = 9.86QDD130 pKa = 3.17EE131 pKa = 5.01AYY133 pKa = 10.53SRR135 pKa = 11.84RR136 pKa = 11.84PNYY139 pKa = 9.97YY140 pKa = 9.36DD141 pKa = 3.68SKK143 pKa = 10.61DD144 pKa = 3.28IPSFYY149 pKa = 10.64DD150 pKa = 3.15KK151 pKa = 10.82KK152 pKa = 10.33FKK154 pKa = 10.7RR155 pKa = 11.84SAFVGSMSGNMSGSVQTQFGLSLNIDD181 pKa = 3.84CCGSAEE187 pKa = 4.28RR188 pKa = 11.84KK189 pKa = 9.4IKK191 pKa = 10.44LDD193 pKa = 3.08QWLNEE198 pKa = 4.2LNLMVQTNKK207 pKa = 10.39EE208 pKa = 4.06KK209 pKa = 10.66FDD211 pKa = 3.7TPKK214 pKa = 10.73KK215 pKa = 9.9VIILAEE221 pKa = 4.27HH222 pKa = 7.01KK223 pKa = 9.96STGVLQNFIKK233 pKa = 9.95RR234 pKa = 11.84TTWNVDD240 pKa = 3.19EE241 pKa = 5.41FSTSQMADD249 pKa = 2.59ILAEE253 pKa = 3.75AVYY256 pKa = 11.15ANFLGIDD263 pKa = 4.11FRR265 pKa = 11.84QSLVRR270 pKa = 11.84EE271 pKa = 4.25DD272 pKa = 3.34EE273 pKa = 4.27QIIKK277 pKa = 9.79KK278 pKa = 10.46AKK280 pKa = 9.3EE281 pKa = 4.11KK282 pKa = 9.11MSKK285 pKa = 7.83MTLCDD290 pKa = 2.93ICFLDD295 pKa = 5.04SFFCEE300 pKa = 4.4YY301 pKa = 10.71EE302 pKa = 4.33SAFHH306 pKa = 6.44SLKK309 pKa = 10.63EE310 pKa = 3.71RR311 pKa = 11.84DD312 pKa = 3.97DD313 pKa = 3.73FVKK316 pKa = 10.9FIEE319 pKa = 5.13LYY321 pKa = 9.21FAKK324 pKa = 10.31IPIVGSKK331 pKa = 10.1SLEE334 pKa = 3.9RR335 pKa = 11.84YY336 pKa = 9.41KK337 pKa = 10.78SEE339 pKa = 3.73KK340 pKa = 9.8TVVLEE345 pKa = 3.83TSIAYY350 pKa = 10.0ADD352 pKa = 4.43RR353 pKa = 11.84ITRR356 pKa = 11.84EE357 pKa = 4.26EE358 pKa = 3.72ISKK361 pKa = 10.09VCEE364 pKa = 3.69FSKK367 pKa = 9.76QQKK370 pKa = 9.37RR371 pKa = 11.84LKK373 pKa = 10.4KK374 pKa = 10.35FNKK377 pKa = 8.79NCCAGLVEE385 pKa = 4.48DD386 pKa = 4.24QNLEE390 pKa = 4.24FGCSISKK397 pKa = 10.46SNRR400 pKa = 11.84KK401 pKa = 9.21KK402 pKa = 10.74KK403 pKa = 10.74SFSKK407 pKa = 10.41KK408 pKa = 9.71KK409 pKa = 9.3KK410 pKa = 8.16KK411 pKa = 10.05KK412 pKa = 9.35YY413 pKa = 9.25YY414 pKa = 9.68KK415 pKa = 9.97KK416 pKa = 10.1SYY418 pKa = 8.3SKK420 pKa = 10.74KK421 pKa = 8.5RR422 pKa = 11.84VRR424 pKa = 11.84SKK426 pKa = 9.51FQPRR430 pKa = 11.84KK431 pKa = 9.42FFRR434 pKa = 11.84KK435 pKa = 9.58KK436 pKa = 10.25PPGKK440 pKa = 10.35EE441 pKa = 3.74KK442 pKa = 10.58FCPKK446 pKa = 10.08GKK448 pKa = 10.06KK449 pKa = 8.7SCRR452 pKa = 11.84CWICSEE458 pKa = 3.87QGHH461 pKa = 5.74YY462 pKa = 11.22ANEE465 pKa = 4.31CPNRR469 pKa = 11.84QAHH472 pKa = 4.91QKK474 pKa = 9.28QVNLFQEE481 pKa = 5.26AIQRR485 pKa = 11.84GLYY488 pKa = 9.55PIEE491 pKa = 4.54DD492 pKa = 4.25PYY494 pKa = 11.36EE495 pKa = 4.65GEE497 pKa = 3.76HH498 pKa = 6.13HH499 pKa = 6.54VYY501 pKa = 10.5EE502 pKa = 5.21FIVKK506 pKa = 9.91EE507 pKa = 4.2EE508 pKa = 4.27PPDD511 pKa = 3.74TDD513 pKa = 4.57SEE515 pKa = 4.79TTSSDD520 pKa = 3.02GSSSEE525 pKa = 4.33SSDD528 pKa = 3.85SEE530 pKa = 4.22

Molecular weight:
61.96 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A0M4J5R0|A0A0M4J5R0_9VIRU Aphid transmission protein OS=Atractylodes mild mottle virus OX=1711685 PE=3 SV=1
MM1 pKa = 8.12DD2 pKa = 6.41LLQKK6 pKa = 10.51VQIQNNHH13 pKa = 4.72QQLSLNATNTSSIYY27 pKa = 10.28ISGKK31 pKa = 10.55LKK33 pKa = 10.18FQGYY37 pKa = 8.64KK38 pKa = 10.12QLDD41 pKa = 3.48LHH43 pKa = 6.69CFVDD47 pKa = 4.6TGASMCVASKK57 pKa = 10.62HH58 pKa = 5.91VIPEE62 pKa = 4.12EE63 pKa = 3.6HH64 pKa = 6.89WEE66 pKa = 4.03NSSRR70 pKa = 11.84QLLVKK75 pKa = 8.86TANGMITINKK85 pKa = 6.96VCKK88 pKa = 10.63NIDD91 pKa = 2.98IMIADD96 pKa = 5.09TIFHH100 pKa = 6.99IPTIYY105 pKa = 9.76QQEE108 pKa = 4.01IGIDD112 pKa = 3.56LLLGNNFLLLYY123 pKa = 10.84GPFTQYY129 pKa = 9.33TDD131 pKa = 4.16RR132 pKa = 11.84IILFKK137 pKa = 10.7EE138 pKa = 3.8NQPVIIGKK146 pKa = 8.56VSKK149 pKa = 10.41AYY151 pKa = 10.01LHH153 pKa = 6.41GMPGYY158 pKa = 10.15LDD160 pKa = 3.69SMKK163 pKa = 10.56KK164 pKa = 10.2NSRR167 pKa = 11.84NPVPPPINITSNKK180 pKa = 9.5IEE182 pKa = 4.17DD183 pKa = 3.66SKK185 pKa = 11.28RR186 pKa = 11.84FSVLKK191 pKa = 10.49LQLLEE196 pKa = 4.16RR197 pKa = 11.84GRR199 pKa = 11.84EE200 pKa = 3.93IINRR204 pKa = 11.84RR205 pKa = 11.84LFLTQQDD212 pKa = 3.69QLSTIEE218 pKa = 4.19KK219 pKa = 10.38LLDD222 pKa = 3.69EE223 pKa = 4.86VCSEE227 pKa = 4.56NPIDD231 pKa = 3.6PHH233 pKa = 8.2KK234 pKa = 10.46SKK236 pKa = 10.58KK237 pKa = 9.29WMTASIKK244 pKa = 10.88LKK246 pKa = 10.75DD247 pKa = 4.07PNTLVQVKK255 pKa = 9.22PMQYY259 pKa = 9.91CPEE262 pKa = 4.08DD263 pKa = 3.61RR264 pKa = 11.84KK265 pKa = 10.86EE266 pKa = 3.7FAVQIKK272 pKa = 9.94EE273 pKa = 4.04LLDD276 pKa = 3.66LKK278 pKa = 10.75IIIPSKK284 pKa = 10.12SPHH287 pKa = 6.66RR288 pKa = 11.84SPAFLVEE295 pKa = 4.16NEE297 pKa = 3.65AEE299 pKa = 3.89RR300 pKa = 11.84RR301 pKa = 11.84RR302 pKa = 11.84GKK304 pKa = 10.54KK305 pKa = 10.14RR306 pKa = 11.84MVVNYY311 pKa = 9.91KK312 pKa = 10.22KK313 pKa = 10.82LNEE316 pKa = 4.03VTLGDD321 pKa = 4.29SHH323 pKa = 6.93NLPNKK328 pKa = 10.49DD329 pKa = 3.68EE330 pKa = 4.84LLTLIRR336 pKa = 11.84GKK338 pKa = 9.05TIYY341 pKa = 10.73SSFDD345 pKa = 3.5CKK347 pKa = 10.96SGFWQVLLDD356 pKa = 4.39QEE358 pKa = 4.77SQLLTAFTCPTGHH371 pKa = 5.73YY372 pKa = 7.52QWKK375 pKa = 9.56VVPFGLKK382 pKa = 8.89QAPSIFQRR390 pKa = 11.84HH391 pKa = 4.9MNNAFRR397 pKa = 11.84EE398 pKa = 4.29FEE400 pKa = 4.33EE401 pKa = 5.12FCCVYY406 pKa = 10.75VDD408 pKa = 5.62DD409 pKa = 5.43ILVFSKK415 pKa = 11.31NEE417 pKa = 3.86TEE419 pKa = 4.12HH420 pKa = 6.43RR421 pKa = 11.84KK422 pKa = 9.31HH423 pKa = 6.69VIAILEE429 pKa = 4.02QCKK432 pKa = 10.29NLGIILSKK440 pKa = 10.75KK441 pKa = 8.95KK442 pKa = 10.55AHH444 pKa = 6.62LFKK447 pKa = 10.79TKK449 pKa = 10.36INFLGLEE456 pKa = 4.11IDD458 pKa = 3.8QGSHH462 pKa = 6.36KK463 pKa = 9.39PQNHH467 pKa = 5.81ILEE470 pKa = 5.46HH471 pKa = 5.17IHH473 pKa = 6.66KK474 pKa = 10.3FPDD477 pKa = 3.12RR478 pKa = 11.84LEE480 pKa = 4.65DD481 pKa = 3.39KK482 pKa = 10.78KK483 pKa = 11.01QLQRR487 pKa = 11.84FLGILTYY494 pKa = 10.95ASDD497 pKa = 4.78YY498 pKa = 10.58IPKK501 pKa = 9.73LAQIRR506 pKa = 11.84KK507 pKa = 8.53PFQAKK512 pKa = 9.74LKK514 pKa = 10.76KK515 pKa = 10.28DD516 pKa = 3.96VTWSWTDD523 pKa = 2.68SDD525 pKa = 4.03TSLMIKK531 pKa = 9.72IKK533 pKa = 10.46KK534 pKa = 8.69GLKK537 pKa = 9.88SFPTLYY543 pKa = 10.43HH544 pKa = 6.54PKK546 pKa = 10.55EE547 pKa = 4.0EE548 pKa = 4.67DD549 pKa = 3.31NLIIEE554 pKa = 5.12CDD556 pKa = 3.45ASDD559 pKa = 4.06SFWGGILKK567 pKa = 10.6AKK569 pKa = 9.84TIDD572 pKa = 3.37EE573 pKa = 4.42DD574 pKa = 3.61KK575 pKa = 11.01EE576 pKa = 4.37YY577 pKa = 10.45ICRR580 pKa = 11.84YY581 pKa = 7.54TSGSFKK587 pKa = 10.4QAEE590 pKa = 4.42LNYY593 pKa = 10.1HH594 pKa = 5.34SNEE597 pKa = 3.92KK598 pKa = 10.48EE599 pKa = 3.42ILAAMNTIKK608 pKa = 10.64KK609 pKa = 9.93FSGYY613 pKa = 7.92LTPVKK618 pKa = 10.31FLIRR622 pKa = 11.84TDD624 pKa = 3.25NKK626 pKa = 10.66NFTFFLNTNHH636 pKa = 7.12KK637 pKa = 10.45GDD639 pKa = 3.9YY640 pKa = 9.4KK641 pKa = 10.28QGRR644 pKa = 11.84LIRR647 pKa = 11.84WQMWFSRR654 pKa = 11.84YY655 pKa = 9.88SFTVEE660 pKa = 4.0HH661 pKa = 6.67LPGNKK666 pKa = 9.3NVFADD671 pKa = 4.28FLTRR675 pKa = 11.84EE676 pKa = 4.33FNNN679 pKa = 3.45

Molecular weight:
78.86 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2358

120

679

393.0

45.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.411 ± 0.455

1.739 ± 0.238

5.895 ± 0.356

7.591 ± 0.741

5.047 ± 0.408

4.241 ± 0.248

2.417 ± 0.342

6.955 ± 0.539

11.323 ± 0.62

8.567 ± 0.78

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.696 ± 0.212

5.768 ± 0.579

4.368 ± 0.5

4.283 ± 0.309

3.562 ± 0.332

8.482 ± 0.649

4.665 ± 0.235

5.089 ± 0.477

0.721 ± 0.187

3.181 ± 0.24

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski