Tessaracoccus bendigoensis DSM 12906

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Tessaracoccus; Tessaracoccus bendigoensis

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3715 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6HC26|A0A1M6HC26_9ACTN TIR domain-containing protein OS=Tessaracoccus bendigoensis DSM 12906 OX=1123357 GN=SAMN02745244_01937 PE=4 SV=1
MM1 pKa = 8.3DD2 pKa = 3.42ITADD6 pKa = 3.44AFEE9 pKa = 4.9LLVEE13 pKa = 4.3EE14 pKa = 5.72ALDD17 pKa = 3.68QLPEE21 pKa = 3.92QLLAGLDD28 pKa = 3.38NLIFVIEE35 pKa = 4.81DD36 pKa = 3.55EE37 pKa = 5.04PEE39 pKa = 4.79DD40 pKa = 3.95GTDD43 pKa = 3.22MLGVYY48 pKa = 10.31DD49 pKa = 4.51GTALTDD55 pKa = 3.47RR56 pKa = 11.84DD57 pKa = 3.95EE58 pKa = 4.67YY59 pKa = 11.71GFGQLPDD66 pKa = 4.58RR67 pKa = 11.84IVLFQGPLTRR77 pKa = 11.84MCADD81 pKa = 3.33EE82 pKa = 4.71EE83 pKa = 4.14EE84 pKa = 5.26LYY86 pKa = 11.24DD87 pKa = 4.77EE88 pKa = 3.94IWITLVHH95 pKa = 6.25EE96 pKa = 4.87LGHH99 pKa = 4.85YY100 pKa = 10.16HH101 pKa = 7.69GIDD104 pKa = 3.4EE105 pKa = 4.63EE106 pKa = 4.37QLHH109 pKa = 5.64SLGWGG114 pKa = 3.24

Molecular weight: 12.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6J8A6|A0A1M6J8A6_9ACTN Uncharacterized protein OS=Tessaracoccus bendigoensis DSM 12906 OX=1123357 GN=SAMN02745244_02481 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84THH17 pKa = 6.18GFRR20 pKa = 11.84TRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILSARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.65GRR40 pKa = 11.84SEE42 pKa = 3.88LSGG45 pKa = 3.35

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3715

0

3715

1232246

31

2120

331.7

35.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.348 ± 0.053

0.71 ± 0.011

6.158 ± 0.034

5.749 ± 0.035

3.093 ± 0.023

8.862 ± 0.038

2.008 ± 0.02

4.258 ± 0.03

2.233 ± 0.029

10.286 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.986 ± 0.016

2.225 ± 0.02

5.417 ± 0.033

3.066 ± 0.023

7.23 ± 0.043

5.852 ± 0.027

6.204 ± 0.039

8.699 ± 0.033

1.621 ± 0.019

1.997 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski