Acinetobacter phage AbTJ

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 62 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A410T650|A0A410T650_9CAUD Uncharacterized protein OS=Acinetobacter phage AbTJ OX=2507835 PE=4 SV=1
MM1 pKa = 7.74SEE3 pKa = 4.27VKK5 pKa = 10.74VKK7 pKa = 9.63TCDD10 pKa = 3.31FCDD13 pKa = 4.32DD14 pKa = 4.35GNGEE18 pKa = 5.06CIFPYY23 pKa = 10.42YY24 pKa = 10.77GLAPHH29 pKa = 7.15IHH31 pKa = 6.21TKK33 pKa = 10.42PIGGTVFLDD42 pKa = 4.09GSLPEE47 pKa = 4.31NFCPDD52 pKa = 3.31GDD54 pKa = 4.17GLGMYY59 pKa = 7.35THH61 pKa = 7.58CLNCGGDD68 pKa = 3.57GTYY71 pKa = 10.62EE72 pKa = 4.09GTQLEE77 pKa = 4.69VKK79 pKa = 10.65AEE81 pKa = 4.25SKK83 pKa = 11.1EE84 pKa = 4.07EE85 pKa = 3.86

Molecular weight: 9.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A410T5T9|A0A410T5T9_9CAUD Uncharacterized protein OS=Acinetobacter phage AbTJ OX=2507835 PE=4 SV=1
MM1 pKa = 7.39SSVSIAEE8 pKa = 3.85YY9 pKa = 10.59RR10 pKa = 11.84KK11 pKa = 10.26LFPIKK16 pKa = 10.04KK17 pKa = 7.86NKK19 pKa = 8.92KK20 pKa = 8.71RR21 pKa = 11.84RR22 pKa = 11.84SAKK25 pKa = 9.41QVARR29 pKa = 11.84QPSVGEE35 pKa = 4.17VVLATHH41 pKa = 7.24LRR43 pKa = 11.84ACKK46 pKa = 9.84IGFEE50 pKa = 4.22QEE52 pKa = 4.33YY53 pKa = 10.13KK54 pKa = 10.5FHH56 pKa = 7.64PEE58 pKa = 3.89RR59 pKa = 11.84KK60 pKa = 8.02WRR62 pKa = 11.84ADD64 pKa = 3.43FLIKK68 pKa = 10.32GSKK71 pKa = 9.64ILIEE75 pKa = 4.15VEE77 pKa = 3.78GGIWSGGRR85 pKa = 11.84HH86 pKa = 4.61TRR88 pKa = 11.84GKK90 pKa = 10.85GYY92 pKa = 10.3LGDD95 pKa = 3.65MEE97 pKa = 5.25KK98 pKa = 10.99YY99 pKa = 10.5NSAAMMGFTVLRR111 pKa = 11.84FSTEE115 pKa = 3.74QVKK118 pKa = 10.86AGVAIKK124 pKa = 10.35QIEE127 pKa = 4.16QLVGG131 pKa = 3.16

Molecular weight: 14.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

62

0

62

13243

49

699

213.6

23.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.317 ± 0.356

1.057 ± 0.113

6.018 ± 0.251

6.6 ± 0.372

4.017 ± 0.234

6.653 ± 0.309

1.616 ± 0.158

6.547 ± 0.234

7.257 ± 0.339

8.639 ± 0.261

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.333 ± 0.149

5.376 ± 0.21

3.738 ± 0.255

4.365 ± 0.232

4.478 ± 0.219

6.607 ± 0.303

6.162 ± 0.283

6.486 ± 0.216

1.382 ± 0.136

3.353 ± 0.203
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski