Streptococcus sp. oral taxon 056 str. F0418

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; unclassified Streptococcus; Streptococcus sp. oral taxon 056

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1957 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9HHN6|F9HHN6_9STRE Replication initiation factor OS=Streptococcus sp. oral taxon 056 str. F0418 OX=904294 GN=HMPREF9182_0580 PE=3 SV=1
MM1 pKa = 8.08DD2 pKa = 4.11ICSDD6 pKa = 3.56YY7 pKa = 11.25LYY9 pKa = 11.29GKK11 pKa = 10.43GFLSLPEE18 pKa = 4.7SIQDD22 pKa = 3.66AVDD25 pKa = 3.62EE26 pKa = 4.69YY27 pKa = 11.13FDD29 pKa = 3.4GWEE32 pKa = 3.93VEE34 pKa = 4.25QYY36 pKa = 11.89GNGNPDD42 pKa = 3.88DD43 pKa = 3.85MWVNHH48 pKa = 5.19YY49 pKa = 10.62VSYY52 pKa = 10.79DD53 pKa = 3.62SKK55 pKa = 11.37EE56 pKa = 3.97LLIDD60 pKa = 4.48TINMLSSQEE69 pKa = 3.94YY70 pKa = 9.56QEE72 pKa = 4.55LLEE75 pKa = 4.13EE76 pKa = 4.26EE77 pKa = 4.97RR78 pKa = 11.84LEE80 pKa = 4.04EE81 pKa = 4.25WIEE84 pKa = 3.85ANRR87 pKa = 11.84EE88 pKa = 3.98EE89 pKa = 4.39IEE91 pKa = 3.87EE92 pKa = 4.66RR93 pKa = 11.84INDD96 pKa = 3.68SYY98 pKa = 12.14SFLGYY103 pKa = 10.35ADD105 pKa = 4.49KK106 pKa = 10.47EE107 pKa = 4.13WHH109 pKa = 6.05VFVV112 pKa = 5.01

Molecular weight: 13.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9HFS6|F9HFS6_9STRE Autoinducer 2 import ATP-binding protein LsrA OS=Streptococcus sp. oral taxon 056 str. F0418 OX=904294 GN=lsrA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.07QPSKK9 pKa = 9.18IRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84KK15 pKa = 8.35HH16 pKa = 4.78GFRR19 pKa = 11.84NRR21 pKa = 11.84MSTKK25 pKa = 9.22NGRR28 pKa = 11.84RR29 pKa = 11.84VLAARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.87GRR39 pKa = 11.84KK40 pKa = 8.75VLAAA44 pKa = 4.31

Molecular weight: 5.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1957

0

1957

560762

37

3829

286.5

32.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.446 ± 0.083

0.557 ± 0.017

5.516 ± 0.047

7.047 ± 0.073

4.716 ± 0.046

6.436 ± 0.049

1.941 ± 0.029

7.349 ± 0.059

6.765 ± 0.058

10.25 ± 0.096

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.497 ± 0.028

4.403 ± 0.046

3.244 ± 0.034

4.211 ± 0.043

4.11 ± 0.046

6.391 ± 0.137

5.515 ± 0.068

6.847 ± 0.055

0.913 ± 0.022

3.845 ± 0.047
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski