Capybara microvirus Cap3_SP_386

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVS7|A0A4V1FVS7_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_386 OX=2585440 PE=4 SV=1
MM1 pKa = 7.34YY2 pKa = 10.77NFIKK6 pKa = 10.29KK7 pKa = 10.03RR8 pKa = 11.84PLEE11 pKa = 4.09QYY13 pKa = 8.14EE14 pKa = 4.6SPVITIQDD22 pKa = 4.05FSTVPDD28 pKa = 3.55EE29 pKa = 4.75NGNKK33 pKa = 9.3VAVFSPSTPKK43 pKa = 9.5IDD45 pKa = 3.48KK46 pKa = 10.83DD47 pKa = 3.16SDD49 pKa = 3.48YY50 pKa = 11.72RR51 pKa = 11.84LMLVGNLIKK60 pKa = 10.8SGINPVSGIFVNPLNRR76 pKa = 11.84LSVDD80 pKa = 4.65SIAQDD85 pKa = 3.88YY86 pKa = 7.9ITSLNQSINEE96 pKa = 4.19TLL98 pKa = 3.29

Molecular weight: 10.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W599|A0A4P8W599_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_386 OX=2585440 PE=4 SV=1
MM1 pKa = 7.54KK2 pKa = 10.1EE3 pKa = 3.99VITIPEE9 pKa = 4.11VTDD12 pKa = 3.87FSYY15 pKa = 11.02RR16 pKa = 11.84FNRR19 pKa = 11.84EE20 pKa = 2.76KK21 pKa = 11.19DD22 pKa = 3.2FLIRR26 pKa = 11.84LNYY29 pKa = 10.12EE30 pKa = 3.62YY31 pKa = 10.82LDD33 pKa = 4.71CIKK36 pKa = 10.78QGGKK40 pKa = 9.98CLFYY44 pKa = 10.7TLTYY48 pKa = 10.0TNQALPKK55 pKa = 8.29IYY57 pKa = 9.86GVPVHH62 pKa = 7.47DD63 pKa = 4.0YY64 pKa = 10.01HH65 pKa = 7.92DD66 pKa = 3.96LRR68 pKa = 11.84SFVNGSFYY76 pKa = 11.01KK77 pKa = 10.34QVSKK81 pKa = 9.67TCNLRR86 pKa = 11.84YY87 pKa = 9.59FISCEE92 pKa = 3.91SGEE95 pKa = 4.5GKK97 pKa = 10.37GKK99 pKa = 10.53RR100 pKa = 11.84GFANNSHH107 pKa = 4.67YY108 pKa = 10.76HH109 pKa = 5.57ILFFLFPKK117 pKa = 9.93EE118 pKa = 4.32GKK120 pKa = 9.89SLLQPYY126 pKa = 7.46EE127 pKa = 3.57FRR129 pKa = 11.84HH130 pKa = 4.86YY131 pKa = 9.92VRR133 pKa = 11.84KK134 pKa = 9.19YY135 pKa = 7.54WQGFDD140 pKa = 3.43EE141 pKa = 4.96SVCFEE146 pKa = 4.4DD147 pKa = 6.33FRR149 pKa = 11.84NCKK152 pKa = 10.11YY153 pKa = 10.92GIARR157 pKa = 11.84EE158 pKa = 3.91GDD160 pKa = 3.31NLGEE164 pKa = 4.17VTSINALQYY173 pKa = 8.59VVKK176 pKa = 10.82YY177 pKa = 6.97VTKK180 pKa = 10.45DD181 pKa = 3.19LNSISNEE188 pKa = 3.33KK189 pKa = 10.53KK190 pKa = 9.87IFDD193 pKa = 3.87RR194 pKa = 11.84YY195 pKa = 10.05EE196 pKa = 3.99SYY198 pKa = 11.26LNKK201 pKa = 9.83ISYY204 pKa = 9.7LPKK207 pKa = 10.29SYY209 pKa = 11.05SDD211 pKa = 3.8YY212 pKa = 11.43VDD214 pKa = 3.23TFFNGAVLVPNFDD227 pKa = 3.1FATRR231 pKa = 11.84LFRR234 pKa = 11.84RR235 pKa = 11.84YY236 pKa = 9.18IHH238 pKa = 5.67TLKK241 pKa = 10.69SKK243 pKa = 10.32YY244 pKa = 7.24NTRR247 pKa = 11.84LVSRR251 pKa = 11.84SNLLLLINEE260 pKa = 4.4EE261 pKa = 4.28YY262 pKa = 11.02KK263 pKa = 11.16NFLISTKK270 pKa = 10.59KK271 pKa = 10.35KK272 pKa = 8.62ICFDD276 pKa = 3.33EE277 pKa = 5.25FIIRR281 pKa = 11.84EE282 pKa = 4.0ASLLTFFEE290 pKa = 3.93QWRR293 pKa = 11.84RR294 pKa = 11.84QQVSEE299 pKa = 4.24KK300 pKa = 10.12LQEE303 pKa = 3.92FKK305 pKa = 10.95KK306 pKa = 10.42IFRR309 pKa = 11.84NRR311 pKa = 11.84YY312 pKa = 6.8SSKK315 pKa = 9.97PRR317 pKa = 11.84FSHH320 pKa = 6.17GLGKK324 pKa = 10.22IGLDD328 pKa = 3.67TVDD331 pKa = 2.98KK332 pKa = 10.4SYY334 pKa = 10.92PIFVDD339 pKa = 3.46PCTNKK344 pKa = 9.74PVRR347 pKa = 11.84IPLYY351 pKa = 9.05YY352 pKa = 10.11FRR354 pKa = 11.84HH355 pKa = 6.52LFTDD359 pKa = 3.88VKK361 pKa = 10.57KK362 pKa = 11.1LNGNNVYY369 pKa = 10.45VLNEE373 pKa = 4.1DD374 pKa = 3.66GIKK377 pKa = 10.58YY378 pKa = 10.11KK379 pKa = 10.49EE380 pKa = 4.23SKK382 pKa = 10.65LSEE385 pKa = 4.16KK386 pKa = 10.71LNYY389 pKa = 10.34LADD392 pKa = 3.69QLIKK396 pKa = 10.73SFYY399 pKa = 10.06AASKK403 pKa = 10.36LPSDD407 pKa = 3.43IQLLNFGRR415 pKa = 11.84YY416 pKa = 8.27IDD418 pKa = 3.36IAFPNRR424 pKa = 11.84KK425 pKa = 9.12YY426 pKa = 10.98VDD428 pKa = 3.38DD429 pKa = 3.8YY430 pKa = 12.12ARR432 pKa = 11.84FKK434 pKa = 11.0LIYY437 pKa = 9.1EE438 pKa = 4.16GRR440 pKa = 11.84KK441 pKa = 9.35FPISEE446 pKa = 4.22FNNPNLLDD454 pKa = 4.49DD455 pKa = 4.15SLTYY459 pKa = 10.33RR460 pKa = 11.84SNLFCSAWYY469 pKa = 9.04FPPGLVTDD477 pKa = 4.11YY478 pKa = 11.34NPDD481 pKa = 3.56YY482 pKa = 11.2LEE484 pKa = 4.33YY485 pKa = 10.33AYY487 pKa = 10.41HH488 pKa = 7.56PYY490 pKa = 10.24FLQNIEE496 pKa = 4.11LFSYY500 pKa = 10.52FDD502 pKa = 4.78RR503 pKa = 11.84ILSYY507 pKa = 10.25FANNKK512 pKa = 8.84NVVYY516 pKa = 8.52WQKK519 pKa = 11.1YY520 pKa = 8.17NDD522 pKa = 3.32WKK524 pKa = 9.69KK525 pKa = 8.29TKK527 pKa = 10.58NYY529 pKa = 9.78INSLSII535 pKa = 3.67

Molecular weight: 63.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1686

98

580

337.2

38.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.567 ± 1.163

0.949 ± 0.331

5.516 ± 0.417

5.219 ± 0.633

6.168 ± 1.102

4.686 ± 0.904

1.839 ± 0.378

6.999 ± 1.148

6.821 ± 0.995

9.075 ± 0.584

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.246 ± 0.411

7.711 ± 0.986

3.321 ± 0.464

4.152 ± 1.06

4.508 ± 0.562

10.202 ± 1.165

5.279 ± 0.57

5.219 ± 0.512

0.712 ± 0.192

5.813 ± 1.591
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski