Lymphocystis disease virus 1 (isolate Darai) (LCDV-1)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Iridoviridae; Alphairidovirinae; Lymphocystivirus; Lymphocystis disease virus 1

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P22176|MCP_LCDV1 Major capsid protein OS=Lymphocystis disease virus 1 (isolate Darai) OX=654922 GN=MCP PE=3 SV=2
MM1 pKa = 7.24TSVAGSSVTSAFIDD15 pKa = 3.72LATYY19 pKa = 7.97DD20 pKa = 3.97TIEE23 pKa = 3.76KK24 pKa = 9.71HH25 pKa = 6.62LYY27 pKa = 10.27GGDD30 pKa = 3.36SAVAYY35 pKa = 7.85FVRR38 pKa = 11.84EE39 pKa = 4.19TKK41 pKa = 10.35KK42 pKa = 9.82CTWFSKK48 pKa = 10.81LPVLLTRR55 pKa = 11.84CSGSPNFDD63 pKa = 3.01QEE65 pKa = 4.08FSVNVSRR72 pKa = 11.84GGDD75 pKa = 3.44YY76 pKa = 11.21VLNSWMTVRR85 pKa = 11.84IPAIKK90 pKa = 10.27LKK92 pKa = 10.71ADD94 pKa = 2.89NRR96 pKa = 11.84MNNNGTIRR104 pKa = 11.84WCKK107 pKa = 10.31NLFHH111 pKa = 6.88NLIKK115 pKa = 9.62QTSVQFNDD123 pKa = 3.47LVAQKK128 pKa = 10.5FEE130 pKa = 5.3SYY132 pKa = 10.83FLDD135 pKa = 3.35YY136 pKa = 10.0WAAFSMCGSKK146 pKa = 10.4RR147 pKa = 11.84AGYY150 pKa = 11.14NNMIGNTIDD159 pKa = 3.38MIQPVDD165 pKa = 3.67HH166 pKa = 6.82TGMLPEE172 pKa = 4.59KK173 pKa = 10.59VLVLPLPYY181 pKa = 10.21FFSRR185 pKa = 11.84DD186 pKa = 3.25SGVALPSAALPYY198 pKa = 10.7NEE200 pKa = 4.64IRR202 pKa = 11.84LTFHH206 pKa = 6.57LRR208 pKa = 11.84DD209 pKa = 3.7YY210 pKa = 11.08TEE212 pKa = 4.81LLIFQHH218 pKa = 6.5KK219 pKa = 8.97QDD221 pKa = 4.01CTIIPITAADD231 pKa = 4.07LEE233 pKa = 4.54YY234 pKa = 11.02GKK236 pKa = 9.76PDD238 pKa = 3.59LKK240 pKa = 10.95DD241 pKa = 3.36VQVWITNAVVTNEE254 pKa = 3.67EE255 pKa = 4.03RR256 pKa = 11.84RR257 pKa = 11.84LMGTTPRR264 pKa = 11.84DD265 pKa = 3.28ILVEE269 pKa = 4.03QVQTAPKK276 pKa = 10.29HH277 pKa = 5.01VFQPLTIPSPNFDD290 pKa = 3.04IRR292 pKa = 11.84FSHH295 pKa = 7.48AIKK298 pKa = 10.7LLFFGVRR305 pKa = 11.84NTTHH309 pKa = 7.21AAVQSNYY316 pKa = 6.92TTASPVILEE325 pKa = 3.97EE326 pKa = 5.07AYY328 pKa = 10.47ASDD331 pKa = 4.27LSLVAADD338 pKa = 5.15PIANVTLVYY347 pKa = 10.59EE348 pKa = 4.26NSARR352 pKa = 11.84LNEE355 pKa = 4.4MGSEE359 pKa = 4.67YY360 pKa = 10.79YY361 pKa = 10.93SLVQPYY367 pKa = 9.42YY368 pKa = 9.95FGGSIPIEE376 pKa = 4.35TGYY379 pKa = 11.37HH380 pKa = 5.3MYY382 pKa = 10.37CYY384 pKa = 9.73SLNMMDD390 pKa = 4.77MDD392 pKa = 4.67PMGSTNYY399 pKa = 9.82GRR401 pKa = 11.84LSNVSMKK408 pKa = 10.94LKK410 pKa = 9.92TSDD413 pKa = 3.5KK414 pKa = 10.95AVVNAGGGGGNMSGYY429 pKa = 10.72KK430 pKa = 9.85DD431 pKa = 3.34AQKK434 pKa = 11.15FEE436 pKa = 4.39FLTMAINHH444 pKa = 5.28NVIRR448 pKa = 11.84IKK450 pKa = 10.44NGSMGFPVLL459 pKa = 3.96

Molecular weight: 51.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P22176|MCP_LCDV1 Major capsid protein OS=Lymphocystis disease virus 1 (isolate Darai) OX=654922 GN=MCP PE=3 SV=2
MM1 pKa = 7.24TSVAGSSVTSAFIDD15 pKa = 3.72LATYY19 pKa = 7.97DD20 pKa = 3.97TIEE23 pKa = 3.76KK24 pKa = 9.71HH25 pKa = 6.62LYY27 pKa = 10.27GGDD30 pKa = 3.36SAVAYY35 pKa = 7.85FVRR38 pKa = 11.84EE39 pKa = 4.19TKK41 pKa = 10.35KK42 pKa = 9.82CTWFSKK48 pKa = 10.81LPVLLTRR55 pKa = 11.84CSGSPNFDD63 pKa = 3.01QEE65 pKa = 4.08FSVNVSRR72 pKa = 11.84GGDD75 pKa = 3.44YY76 pKa = 11.21VLNSWMTVRR85 pKa = 11.84IPAIKK90 pKa = 10.27LKK92 pKa = 10.71ADD94 pKa = 2.89NRR96 pKa = 11.84MNNNGTIRR104 pKa = 11.84WCKK107 pKa = 10.31NLFHH111 pKa = 6.88NLIKK115 pKa = 9.62QTSVQFNDD123 pKa = 3.47LVAQKK128 pKa = 10.5FEE130 pKa = 5.3SYY132 pKa = 10.83FLDD135 pKa = 3.35YY136 pKa = 10.0WAAFSMCGSKK146 pKa = 10.4RR147 pKa = 11.84AGYY150 pKa = 11.14NNMIGNTIDD159 pKa = 3.38MIQPVDD165 pKa = 3.67HH166 pKa = 6.82TGMLPEE172 pKa = 4.59KK173 pKa = 10.59VLVLPLPYY181 pKa = 10.21FFSRR185 pKa = 11.84DD186 pKa = 3.25SGVALPSAALPYY198 pKa = 10.7NEE200 pKa = 4.64IRR202 pKa = 11.84LTFHH206 pKa = 6.57LRR208 pKa = 11.84DD209 pKa = 3.7YY210 pKa = 11.08TEE212 pKa = 4.81LLIFQHH218 pKa = 6.5KK219 pKa = 8.97QDD221 pKa = 4.01CTIIPITAADD231 pKa = 4.07LEE233 pKa = 4.54YY234 pKa = 11.02GKK236 pKa = 9.76PDD238 pKa = 3.59LKK240 pKa = 10.95DD241 pKa = 3.36VQVWITNAVVTNEE254 pKa = 3.67EE255 pKa = 4.03RR256 pKa = 11.84RR257 pKa = 11.84LMGTTPRR264 pKa = 11.84DD265 pKa = 3.28ILVEE269 pKa = 4.03QVQTAPKK276 pKa = 10.29HH277 pKa = 5.01VFQPLTIPSPNFDD290 pKa = 3.04IRR292 pKa = 11.84FSHH295 pKa = 7.48AIKK298 pKa = 10.7LLFFGVRR305 pKa = 11.84NTTHH309 pKa = 7.21AAVQSNYY316 pKa = 6.92TTASPVILEE325 pKa = 3.97EE326 pKa = 5.07AYY328 pKa = 10.47ASDD331 pKa = 4.27LSLVAADD338 pKa = 5.15PIANVTLVYY347 pKa = 10.59EE348 pKa = 4.26NSARR352 pKa = 11.84LNEE355 pKa = 4.4MGSEE359 pKa = 4.67YY360 pKa = 10.79YY361 pKa = 10.93SLVQPYY367 pKa = 9.42YY368 pKa = 9.95FGGSIPIEE376 pKa = 4.35TGYY379 pKa = 11.37HH380 pKa = 5.3MYY382 pKa = 10.37CYY384 pKa = 9.73SLNMMDD390 pKa = 4.77MDD392 pKa = 4.67PMGSTNYY399 pKa = 9.82GRR401 pKa = 11.84LSNVSMKK408 pKa = 10.94LKK410 pKa = 9.92TSDD413 pKa = 3.5KK414 pKa = 10.95AVVNAGGGGGNMSGYY429 pKa = 10.72KK430 pKa = 9.85DD431 pKa = 3.34AQKK434 pKa = 11.15FEE436 pKa = 4.39FLTMAINHH444 pKa = 5.28NVIRR448 pKa = 11.84IKK450 pKa = 10.44NGSMGFPVLL459 pKa = 3.96

Molecular weight: 51.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

459

459

459

459.0

51.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.972 ± 0.0

1.307 ± 0.0

5.229 ± 0.0

3.922 ± 0.0

5.011 ± 0.0

6.318 ± 0.0

2.179 ± 0.0

5.664 ± 0.0

4.793 ± 0.0

8.497 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.922 ± 0.0

6.536 ± 0.0

4.793 ± 0.0

3.05 ± 0.0

3.922 ± 0.0

7.625 ± 0.0

6.754 ± 0.0

7.407 ± 0.0

1.089 ± 0.0

5.011 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski