Camelus dromedarius papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 6

Average proteome isoelectric point is 7.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2YGI1|F2YGI1_9PAPI Major capsid protein L1 OS=Camelus dromedarius papillomavirus 2 OX=996651 GN=L1 PE=3 SV=1
MM1 pKa = 7.83ASRR4 pKa = 11.84KK5 pKa = 8.71RR6 pKa = 11.84VRR8 pKa = 11.84RR9 pKa = 11.84ANPYY13 pKa = 9.77EE14 pKa = 3.99LYY16 pKa = 8.96RR17 pKa = 11.84TCKK20 pKa = 9.96AANTCPRR27 pKa = 11.84DD28 pKa = 3.74VIPLVEE34 pKa = 4.69GNTLADD40 pKa = 4.74QILKK44 pKa = 8.1WGSWAVYY51 pKa = 10.18LGGLGIGTGTQSISGRR67 pKa = 11.84PITTGSVKK75 pKa = 10.89SNIEE79 pKa = 3.81KK80 pKa = 10.63FLVNLFGKK88 pKa = 10.7GGTQTRR94 pKa = 11.84APTGGIPLEE103 pKa = 4.12TLGAGTSLGTPDD115 pKa = 3.55VAVTATDD122 pKa = 3.33APTVVVPEE130 pKa = 4.4APSGGEE136 pKa = 3.73PGEE139 pKa = 4.07GLGVVTEE146 pKa = 4.38NTQEE150 pKa = 4.0TAFTYY155 pKa = 10.93VDD157 pKa = 3.25VDD159 pKa = 3.66DD160 pKa = 4.5TGEE163 pKa = 3.91IMVVNLRR170 pKa = 11.84PDD172 pKa = 3.69GDD174 pKa = 4.61DD175 pKa = 3.47PTSHH179 pKa = 7.1LSSSTTFHH187 pKa = 6.5NPTYY191 pKa = 9.97QEE193 pKa = 3.56PSGRR197 pKa = 11.84LEE199 pKa = 4.42TVGEE203 pKa = 4.18TSNTEE208 pKa = 4.16NIFLAGEE215 pKa = 4.22NLGSTGGEE223 pKa = 3.96EE224 pKa = 4.05IEE226 pKa = 4.86LSLFSKK232 pKa = 10.42PRR234 pKa = 11.84TSTPRR239 pKa = 11.84QSPRR243 pKa = 11.84APVRR247 pKa = 11.84GRR249 pKa = 11.84ANWFSRR255 pKa = 11.84RR256 pKa = 11.84YY257 pKa = 7.69YY258 pKa = 9.53TQLNLNNPAVITQPGEE274 pKa = 3.96VIGTQFVNPVFEE286 pKa = 4.64GSSFEE291 pKa = 4.4APPAYY296 pKa = 9.84EE297 pKa = 3.9SWNTEE302 pKa = 3.82LPEE305 pKa = 4.67LRR307 pKa = 11.84DD308 pKa = 3.63ATHH311 pKa = 5.48YY312 pKa = 7.7TASRR316 pKa = 11.84LLQGPSGRR324 pKa = 11.84VGVDD328 pKa = 3.14RR329 pKa = 11.84VATTRR334 pKa = 11.84TIGTRR339 pKa = 11.84SGIRR343 pKa = 11.84IGPEE347 pKa = 3.3VHH349 pKa = 6.1VRR351 pKa = 11.84QSLSSISDD359 pKa = 3.14AVEE362 pKa = 3.6FATFVSGDD370 pKa = 3.54VEE372 pKa = 4.22TAPTVEE378 pKa = 4.07TAFVEE383 pKa = 4.66EE384 pKa = 4.27TAPFEE389 pKa = 6.17DD390 pKa = 3.64IDD392 pKa = 4.49LDD394 pKa = 4.15SVYY397 pKa = 11.03SDD399 pKa = 4.39EE400 pKa = 5.95DD401 pKa = 4.19LLDD404 pKa = 3.61QYY406 pKa = 11.23PATSHH411 pKa = 5.42GRR413 pKa = 11.84LVFGEE418 pKa = 4.18RR419 pKa = 11.84FNRR422 pKa = 11.84DD423 pKa = 2.88IVPIPIDD430 pKa = 3.71PPFTALVPVDD440 pKa = 3.24VTTYY444 pKa = 7.86VTPGANWPDD453 pKa = 3.64FTPGSKK459 pKa = 10.49GGMTPGIIIDD469 pKa = 3.86LSEE472 pKa = 4.22EE473 pKa = 4.21LFKK476 pKa = 10.68HH477 pKa = 5.86YY478 pKa = 10.29YY479 pKa = 9.25LHH481 pKa = 7.39EE482 pKa = 4.43SLLRR486 pKa = 11.84RR487 pKa = 11.84KK488 pKa = 9.46RR489 pKa = 11.84RR490 pKa = 11.84RR491 pKa = 11.84RR492 pKa = 11.84KK493 pKa = 9.54RR494 pKa = 11.84LYY496 pKa = 10.37AA497 pKa = 4.23

Molecular weight: 53.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2YGH8|F2YGH8_9PAPI Replication protein E1 OS=Camelus dromedarius papillomavirus 2 OX=996651 GN=E1 PE=3 SV=1
MM1 pKa = 7.49AAAEE5 pKa = 4.3DD6 pKa = 4.22TPPRR10 pKa = 11.84PGPSSRR16 pKa = 11.84CPPSIAPTVKK26 pKa = 9.97HH27 pKa = 6.13RR28 pKa = 11.84CPACKK33 pKa = 9.68GVHH36 pKa = 6.07GPITYY41 pKa = 8.44PQLPCLSLIKK51 pKa = 9.83WNPPTWVPSEE61 pKa = 4.26SAVLGPLHH69 pKa = 6.1VLRR72 pKa = 11.84PSRR75 pKa = 11.84YY76 pKa = 8.46YY77 pKa = 10.61GAQGSRR83 pKa = 11.84NAYY86 pKa = 9.8LPPPTCRR93 pKa = 11.84ARR95 pKa = 11.84SRR97 pKa = 11.84KK98 pKa = 8.56VWHH101 pKa = 6.13EE102 pKa = 3.25HH103 pKa = 5.23RR104 pKa = 11.84KK105 pKa = 7.29WMKK108 pKa = 9.69RR109 pKa = 11.84RR110 pKa = 11.84HH111 pKa = 5.5LRR113 pKa = 11.84TPRR116 pKa = 11.84RR117 pKa = 11.84YY118 pKa = 8.97PP119 pKa = 3.2

Molecular weight: 13.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2432

119

642

347.4

38.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.401 ± 0.887

2.426 ± 0.588

5.222 ± 0.32

5.387 ± 0.472

3.454 ± 0.408

7.196 ± 0.702

2.22 ± 0.32

3.331 ± 0.382

5.428 ± 0.828

7.936 ± 0.326

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.521 ± 0.248

3.824 ± 0.492

7.319 ± 1.334

4.235 ± 0.539

6.414 ± 0.717

7.689 ± 0.716

6.867 ± 1.013

6.826 ± 0.406

1.521 ± 0.218

3.783 ± 0.28
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski