Turkey adenovirus 1

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Turkey aviadenovirus B

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 37 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E0YC53|E0YC53_9ADEN ORF1B OS=Turkey adenovirus 1 OX=878329 PE=4 SV=1
DDD2 pKa = 6.08ISVGDDD8 pKa = 3.92PDDD11 pKa = 3.19AVRR14 pKa = 11.84LSVEEE19 pKa = 4.1AGEEE23 pKa = 4.17EE24 pKa = 4.19EE25 pKa = 4.43GGGSCNCFCEEE36 pKa = 4.56DDD38 pKa = 3.67GKKK41 pKa = 8.83TSCSLCTCPVSCSIS

Molecular weight: 5.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E0YC66|E0YC66_9ADEN PX OS=Turkey adenovirus 1 OX=878329 PE=4 SV=1
MM1 pKa = 7.74SILISPSDD9 pKa = 3.55NRR11 pKa = 11.84GWGAAMRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84CRR22 pKa = 11.84SSMRR26 pKa = 11.84GVGLRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84TTTVRR39 pKa = 11.84PLTLRR44 pKa = 11.84SLLGLGARR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84GRR58 pKa = 11.84ASSRR62 pKa = 11.84VSSRR66 pKa = 11.84LVVVRR71 pKa = 11.84TSRR74 pKa = 11.84TSRR77 pKa = 11.84RR78 pKa = 11.84RR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 3.32

Molecular weight: 9.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

36

1

37

13075

56

1320

353.4

39.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.69 ± 0.581

1.736 ± 0.236

5.683 ± 0.419

5.996 ± 0.418

3.816 ± 0.259

7.87 ± 0.862

2.241 ± 0.223

2.264 ± 0.199

2.6 ± 0.2

9.293 ± 0.387

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.996 ± 0.22

3.189 ± 0.451

7.526 ± 0.418

3.526 ± 0.349

9.231 ± 0.575

6.05 ± 0.326

5.423 ± 0.403

7.197 ± 0.374

1.293 ± 0.14

3.38 ± 0.296
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski