Mycoplasma penetrans (strain HF-2)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma penetrans

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1028 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8EUZ1|Q8EUZ1_MYCPE Transcriptional regulator DeoR family protein OS=Mycoplasma penetrans (strain HF-2) OX=272633 GN=MYPE7770 PE=4 SV=1
MM1 pKa = 7.46VEE3 pKa = 4.43PNEE6 pKa = 3.88FDD8 pKa = 3.46QFEE11 pKa = 4.21FDD13 pKa = 4.24QSYY16 pKa = 10.51DD17 pKa = 3.32QNLFYY22 pKa = 10.32PQEE25 pKa = 4.26YY26 pKa = 9.86VDD28 pKa = 3.81TVQYY32 pKa = 8.05YY33 pKa = 9.0QPIEE37 pKa = 4.59SIHH40 pKa = 6.24DD41 pKa = 3.56QQFEE45 pKa = 4.32QPVEE49 pKa = 4.07YY50 pKa = 11.03VQDD53 pKa = 3.63QQFEE57 pKa = 4.45QPVEE61 pKa = 4.07YY62 pKa = 11.04VQDD65 pKa = 3.52QQFQQPVEE73 pKa = 4.11YY74 pKa = 10.74VQTQFDD80 pKa = 3.78QNIQQTPQNEE90 pKa = 3.83NAEE93 pKa = 4.49YY94 pKa = 10.18IDD96 pKa = 3.6TSSWTEE102 pKa = 3.4QDD104 pKa = 3.75FINYY108 pKa = 7.38YY109 pKa = 10.4AQVDD113 pKa = 4.42FYY115 pKa = 11.72NKK117 pKa = 9.49YY118 pKa = 9.66PNAFVYY124 pKa = 9.77QGKK127 pKa = 9.89IYY129 pKa = 10.89NSDD132 pKa = 3.34LDD134 pKa = 3.53QYY136 pKa = 10.61VPSKK140 pKa = 10.78IGDD143 pKa = 3.86LPNEE147 pKa = 4.23PNLQIVKK154 pKa = 10.38APEE157 pKa = 3.84FEE159 pKa = 4.21EE160 pKa = 5.27KK161 pKa = 10.39SIKK164 pKa = 10.75RR165 pKa = 11.84NDD167 pKa = 3.4FLKK170 pKa = 11.24NNN172 pKa = 3.9

Molecular weight: 20.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8EUE0|Q8EUE0_MYCPE Aminopeptidase OS=Mycoplasma penetrans (strain HF-2) OX=272633 GN=MYPE9890 PE=3 SV=1
MM1 pKa = 7.44ARR3 pKa = 11.84ILGVDD8 pKa = 3.26IPNNKK13 pKa = 9.09RR14 pKa = 11.84VVISLTYY21 pKa = 9.96IFGIGKK27 pKa = 9.3SRR29 pKa = 11.84SQEE32 pKa = 3.73ILSKK36 pKa = 11.22AKK38 pKa = 9.61IDD40 pKa = 3.76EE41 pKa = 4.28NKK43 pKa = 10.01KK44 pKa = 9.98VSALSEE50 pKa = 4.31EE51 pKa = 4.22EE52 pKa = 3.85LATIRR57 pKa = 11.84KK58 pKa = 8.47IASEE62 pKa = 4.06YY63 pKa = 10.55VIEE66 pKa = 4.98GDD68 pKa = 3.92LRR70 pKa = 11.84RR71 pKa = 11.84EE72 pKa = 3.5VAMNIKK78 pKa = 10.13RR79 pKa = 11.84LMEE82 pKa = 4.52IGSYY86 pKa = 9.99RR87 pKa = 11.84GIRR90 pKa = 11.84HH91 pKa = 5.92RR92 pKa = 11.84RR93 pKa = 11.84NLPVRR98 pKa = 11.84GQRR101 pKa = 11.84TKK103 pKa = 11.11CNARR107 pKa = 11.84TRR109 pKa = 11.84KK110 pKa = 9.89GPRR113 pKa = 11.84KK114 pKa = 7.53TVANKK119 pKa = 10.33KK120 pKa = 9.81IEE122 pKa = 4.29TKK124 pKa = 10.69

Molecular weight: 14.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1028

0

1028

397721

47

3317

386.9

43.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.711 ± 0.076

0.718 ± 0.023

5.623 ± 0.073

6.032 ± 0.13

5.345 ± 0.062

4.816 ± 0.082

1.098 ± 0.028

8.972 ± 0.079

9.528 ± 0.119

8.961 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.708 ± 0.031

8.754 ± 0.105

2.566 ± 0.042

2.935 ± 0.038

2.387 ± 0.041

8.474 ± 0.127

6.137 ± 0.117

5.824 ± 0.062

0.958 ± 0.024

4.453 ± 0.057
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski