Torque teno midi virus 4

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A8DMP4|A8DMP4_9VIRU Capsid protein OS=Torque teno midi virus 4 OX=2065045 PE=3 SV=1
MM1 pKa = 6.84STFYY5 pKa = 10.79KK6 pKa = 10.09PSVYY10 pKa = 10.47NGPTKK15 pKa = 9.96EE16 pKa = 4.04QMWMSVVTDD25 pKa = 3.81FHH27 pKa = 8.55DD28 pKa = 3.71SFCRR32 pKa = 11.84CFHH35 pKa = 6.32SFAHH39 pKa = 6.35ILDD42 pKa = 5.26LIFPDD47 pKa = 3.58GHH49 pKa = 6.94RR50 pKa = 11.84DD51 pKa = 3.19RR52 pKa = 11.84DD53 pKa = 3.48KK54 pKa = 10.78TIRR57 pKa = 11.84EE58 pKa = 3.94IIEE61 pKa = 4.48RR62 pKa = 11.84DD63 pKa = 3.87LKK65 pKa = 10.69CHH67 pKa = 6.36SGGDD71 pKa = 3.55EE72 pKa = 3.96EE73 pKa = 4.54EE74 pKa = 4.41RR75 pKa = 11.84CGGVLAAAIEE85 pKa = 4.11NTEE88 pKa = 4.35NINQEE93 pKa = 4.01EE94 pKa = 4.38SQDD97 pKa = 3.46IADD100 pKa = 3.68ADD102 pKa = 3.69IRR104 pKa = 11.84EE105 pKa = 4.29LLAAAEE111 pKa = 4.27SAEE114 pKa = 3.98RR115 pKa = 11.84RR116 pKa = 3.81

Molecular weight: 13.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8DMP5|A8DMP5_9VIRU ORF3 OS=Torque teno midi virus 4 OX=2065045 PE=4 SV=1
MM1 pKa = 7.27TEE3 pKa = 3.96IVLGNYY9 pKa = 10.05LITIFSILSGEE20 pKa = 4.38DD21 pKa = 3.31QQHH24 pKa = 6.16HH25 pKa = 5.59NKK27 pKa = 9.92KK28 pKa = 10.17LATPTPKK35 pKa = 10.19TSTLFPILSKK45 pKa = 10.6EE46 pKa = 3.89QYY48 pKa = 10.32KK49 pKa = 10.31YY50 pKa = 8.1PTHH53 pKa = 6.68SNKK56 pKa = 9.93ALKK59 pKa = 10.15AYY61 pKa = 7.41STTGILEE68 pKa = 4.24EE69 pKa = 5.26GSLQKK74 pKa = 10.68QLLKK78 pKa = 10.82EE79 pKa = 4.0CAKK82 pKa = 9.35TSKK85 pKa = 10.51LIQISSQIRR94 pKa = 11.84KK95 pKa = 8.64RR96 pKa = 11.84HH97 pKa = 4.27QQKK100 pKa = 10.68DD101 pKa = 3.45QDD103 pKa = 3.81WQEE106 pKa = 3.62NSYY109 pKa = 9.48TPEE112 pKa = 3.76EE113 pKa = 4.03KK114 pKa = 10.31KK115 pKa = 10.42QRR117 pKa = 11.84NQDD120 pKa = 3.49MSPGSLQRR128 pKa = 11.84RR129 pKa = 11.84YY130 pKa = 10.36LPRR133 pKa = 11.84NTTDD137 pKa = 2.56TRR139 pKa = 11.84RR140 pKa = 11.84NHH142 pKa = 6.65PPHH145 pKa = 6.82PAAARR150 pKa = 11.84AAPPLRR156 pKa = 11.84HH157 pKa = 6.03RR158 pKa = 11.84PRR160 pKa = 11.84PRR162 pKa = 11.84RR163 pKa = 11.84HH164 pKa = 6.1LGCGRR169 pKa = 11.84AGAKK173 pKa = 8.62MAGPNN178 pKa = 3.41

Molecular weight: 20.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

952

116

658

317.3

36.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.357 ± 1.288

1.471 ± 0.568

3.676 ± 1.681

5.147 ± 1.853

4.307 ± 1.024

4.832 ± 0.155

2.941 ± 0.817

5.987 ± 0.501

8.613 ± 1.539

6.933 ± 0.688

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.366 ± 0.436

4.622 ± 0.383

7.563 ± 1.43

4.832 ± 0.984

7.668 ± 0.278

7.668 ± 0.314

7.038 ± 0.762

2.626 ± 0.652

1.891 ± 0.664

5.462 ± 1.606
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski