Cladophialophora carrionii

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Cladophialophora

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11181 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C1CJS8|A0A1C1CJS8_9EURO Putative oxidoreductase OS=Cladophialophora carrionii OX=86049 GN=CLCR_05151 PE=4 SV=1
MM1 pKa = 7.98PIPHH5 pKa = 7.4EE6 pKa = 3.61IHH8 pKa = 6.81AAFDD12 pKa = 3.46QFGDD16 pKa = 3.67LDD18 pKa = 4.24FSEE21 pKa = 4.48LMYY24 pKa = 11.02GIVLFVNLGRR34 pKa = 11.84HH35 pKa = 5.17FCLTRR40 pKa = 11.84YY41 pKa = 9.53YY42 pKa = 11.0AFEE45 pKa = 4.24NFVLDD50 pKa = 3.32TCDD53 pKa = 3.42EE54 pKa = 3.68IRR56 pKa = 11.84YY57 pKa = 9.38RR58 pKa = 11.84DD59 pKa = 3.88PSCDD63 pKa = 3.01RR64 pKa = 11.84SGATLVGLIVLIVVLSATPGPVALMVVALLLCEE97 pKa = 4.08MVKK100 pKa = 10.55LLPEE104 pKa = 3.96MVMGRR109 pKa = 11.84EE110 pKa = 3.65WDD112 pKa = 3.62YY113 pKa = 11.99DD114 pKa = 3.83DD115 pKa = 6.38DD116 pKa = 4.68EE117 pKa = 5.71EE118 pKa = 5.66GVDD121 pKa = 3.71YY122 pKa = 10.83EE123 pKa = 4.26YY124 pKa = 11.27DD125 pKa = 3.62EE126 pKa = 5.05EE127 pKa = 5.7GLDD130 pKa = 4.13FEE132 pKa = 5.78HH133 pKa = 8.01DD134 pKa = 3.62EE135 pKa = 4.48EE136 pKa = 6.13GLDD139 pKa = 5.64FEE141 pKa = 6.4DD142 pKa = 3.57EE143 pKa = 4.58TNVEE147 pKa = 4.12KK148 pKa = 10.9RR149 pKa = 3.4

Molecular weight: 17.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C1C6P1|A0A1C1C6P1_9EURO Putative transporter OS=Cladophialophora carrionii OX=86049 GN=CLCR_00621 PE=4 SV=1
MM1 pKa = 7.54LRR3 pKa = 11.84PPQVPAQAQAPASFEE18 pKa = 3.51GAARR22 pKa = 11.84VKK24 pKa = 10.56KK25 pKa = 9.81PAGARR30 pKa = 11.84GGMRR34 pKa = 11.84GGRR37 pKa = 11.84GAPRR41 pKa = 11.84GRR43 pKa = 11.84GAPGRR48 pKa = 11.84GAPRR52 pKa = 11.84GRR54 pKa = 11.84GSFGGGSFGGGRR66 pKa = 11.84GAPRR70 pKa = 11.84GGGRR74 pKa = 11.84GGFSGGRR81 pKa = 11.84GGGPRR86 pKa = 11.84GGGFGSRR93 pKa = 11.84GRR95 pKa = 11.84GRR97 pKa = 11.84GG98 pKa = 3.24

Molecular weight: 9.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11181

0

11181

5263867

57

6597

470.8

52.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.97 ± 0.017

1.154 ± 0.009

5.782 ± 0.016

6.097 ± 0.021

3.591 ± 0.015

6.923 ± 0.022

2.493 ± 0.011

4.607 ± 0.013

4.674 ± 0.018

8.821 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.137 ± 0.009

3.469 ± 0.012

6.238 ± 0.024

4.17 ± 0.017

6.361 ± 0.02

8.152 ± 0.024

6.068 ± 0.019

6.199 ± 0.015

1.431 ± 0.008

2.664 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski