Southern rice black-streaked dwarf virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; Spinareovirinae; Fijivirus

Average proteome isoelectric point is 5.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|J9UCP0|J9UCP0_9REOV p2 OS=Southern rice black-streaked dwarf virus OX=519497 GN=SRBSDVs2_gp1 PE=4 SV=1
MM1 pKa = 7.72NYY3 pKa = 10.32NDD5 pKa = 5.51ANDD8 pKa = 4.05SYY10 pKa = 11.47QLNHH14 pKa = 5.08VTSLEE19 pKa = 3.9FDD21 pKa = 3.87PLDD24 pKa = 3.98PEE26 pKa = 4.59VNLISQDD33 pKa = 3.22FDD35 pKa = 4.49DD36 pKa = 5.24YY37 pKa = 11.5DD38 pKa = 3.9YY39 pKa = 11.82HH40 pKa = 8.49DD41 pKa = 5.37LEE43 pKa = 4.73VNSLSEE49 pKa = 4.79DD50 pKa = 3.57LSDD53 pKa = 3.8MNLMATRR60 pKa = 11.84IKK62 pKa = 10.77NFPDD66 pKa = 2.94DD67 pKa = 3.5TFEE70 pKa = 4.34VFEE73 pKa = 4.95SLDD76 pKa = 3.8APPPLASLIYY86 pKa = 10.57SEE88 pKa = 6.32VSDD91 pKa = 4.08EE92 pKa = 4.08WCDD95 pKa = 2.99IDD97 pKa = 4.36NFLDD101 pKa = 3.27IRR103 pKa = 11.84VVNDD107 pKa = 3.08EE108 pKa = 4.34SQFEE112 pKa = 4.42FVNSHH117 pKa = 5.45INSRR121 pKa = 11.84LLITLNSNPNILWTAVGLLTKK142 pKa = 10.47ISLLQEE148 pKa = 4.08FEE150 pKa = 3.93NFEE153 pKa = 4.17ILNYY157 pKa = 7.18WQAMEE162 pKa = 4.83RR163 pKa = 11.84RR164 pKa = 11.84WDD166 pKa = 4.27LMNDD170 pKa = 3.34DD171 pKa = 4.74LKK173 pKa = 11.08IGFVLRR179 pKa = 11.84AFDD182 pKa = 4.37LKK184 pKa = 11.0QNQFEE189 pKa = 4.91LLTKK193 pKa = 10.61LLRR196 pKa = 11.84DD197 pKa = 3.55SLFFAGINLIGKK209 pKa = 9.7SSMLPMLTVHH219 pKa = 6.98SISDD223 pKa = 4.46YY224 pKa = 9.45IDD226 pKa = 2.61HH227 pKa = 7.3WFPTEE232 pKa = 4.78CYY234 pKa = 10.47SSDD237 pKa = 2.91NFMSFIKK244 pKa = 10.34CHH246 pKa = 6.66TITVPKK252 pKa = 8.31WKK254 pKa = 10.21KK255 pKa = 10.09IVVQFYY261 pKa = 10.22LRR263 pKa = 11.84QIFSRR268 pKa = 11.84SRR270 pKa = 11.84TQVLMAHH277 pKa = 6.41VDD279 pKa = 2.99IDD281 pKa = 2.87HH282 pKa = 7.02WYY284 pKa = 9.94DD285 pKa = 3.23VFMKK289 pKa = 9.96TLVFKK294 pKa = 10.74SMRR297 pKa = 11.84KK298 pKa = 6.31TKK300 pKa = 10.69KK301 pKa = 8.69MLKK304 pKa = 10.36NILNLL309 pKa = 3.61

Molecular weight:
36.46 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|J9UL77|J9UL77_9REOV p6 OS=Southern rice black-streaked dwarf virus OX=519497 GN=SRBSDVs6_gp1 PE=4 SV=1
MM1 pKa = 7.44VEE3 pKa = 4.25RR4 pKa = 11.84KK5 pKa = 9.21FSRR8 pKa = 11.84SAEE11 pKa = 3.79ICLKK15 pKa = 10.4KK16 pKa = 10.67FNSIQKK22 pKa = 9.36FRR24 pKa = 11.84QNKK27 pKa = 6.82QQQKK31 pKa = 6.49TNRR34 pKa = 11.84DD35 pKa = 3.04RR36 pKa = 11.84TISQKK41 pKa = 8.86EE42 pKa = 3.94KK43 pKa = 10.23KK44 pKa = 9.87IKK46 pKa = 10.43DD47 pKa = 3.56RR48 pKa = 11.84APPPSKK54 pKa = 10.72KK55 pKa = 10.05EE56 pKa = 4.22DD57 pKa = 3.39IPTVSTPISIEE68 pKa = 4.04SQSNLDD74 pKa = 3.75EE75 pKa = 4.06QRR77 pKa = 11.84TSYY80 pKa = 10.48IHH82 pKa = 7.04LLHH85 pKa = 6.41QKK87 pKa = 10.85DD88 pKa = 4.33SILDD92 pKa = 4.16AIIEE96 pKa = 4.16DD97 pKa = 3.94AEE99 pKa = 4.26NIRR102 pKa = 11.84NVFIGEE108 pKa = 4.09VPLTKK113 pKa = 10.33EE114 pKa = 3.79IIKK117 pKa = 10.53NRR119 pKa = 11.84LDD121 pKa = 4.99DD122 pKa = 4.1ISTVLNNASDD132 pKa = 5.27LILKK136 pKa = 9.99LFEE139 pKa = 4.8SDD141 pKa = 3.58NGILNEE147 pKa = 4.23CVIPNDD153 pKa = 3.83VIQKK157 pKa = 9.9DD158 pKa = 3.87IYY160 pKa = 10.82SILHH164 pKa = 5.84PSEE167 pKa = 3.91IFDD170 pKa = 3.89YY171 pKa = 11.19NGFGIDD177 pKa = 3.78EE178 pKa = 4.45VNNLAISPKK187 pKa = 9.73IRR189 pKa = 11.84YY190 pKa = 8.16LPNWNIQKK198 pKa = 9.54IRR200 pKa = 11.84STIDD204 pKa = 3.03LLKK207 pKa = 10.75NDD209 pKa = 4.32NSPLKK214 pKa = 9.71PVKK217 pKa = 9.87LAHH220 pKa = 7.19DD221 pKa = 4.01YY222 pKa = 11.7GLISNNLKK230 pKa = 10.2RR231 pKa = 11.84KK232 pKa = 9.74LLIGVDD238 pKa = 3.19RR239 pKa = 11.84MFNKK243 pKa = 10.54LSIQHH248 pKa = 6.56RR249 pKa = 11.84FGTFEE254 pKa = 4.02SQIFSCFLMKK264 pKa = 10.43QLLTEE269 pKa = 4.12EE270 pKa = 4.04QCYY273 pKa = 10.95VNLPNCVLKK282 pKa = 11.07SKK284 pKa = 9.34FQKK287 pKa = 10.46RR288 pKa = 11.84GIDD291 pKa = 3.71TVCWQYY297 pKa = 11.39LRR299 pKa = 11.84QIILHH304 pKa = 5.39YY305 pKa = 10.81NGFPFYY311 pKa = 10.53HH312 pKa = 6.35HH313 pKa = 5.68THH315 pKa = 5.83SARR318 pKa = 11.84FGVLDD323 pKa = 3.42STKK326 pKa = 10.42ISIHH330 pKa = 5.93TDD332 pKa = 3.31LPVSCVLPSVLHH344 pKa = 6.04GLLNGIVSEE353 pKa = 4.47LLCDD357 pKa = 4.42LNSEE361 pKa = 4.27TALIYY366 pKa = 10.49AKK368 pKa = 10.48HH369 pKa = 6.63LMFCSQQSTYY379 pKa = 9.5QRR381 pKa = 11.84QLDD384 pKa = 3.99FKK386 pKa = 11.06DD387 pKa = 4.56SFRR390 pKa = 11.84SWPKK394 pKa = 10.12LCYY397 pKa = 10.17DD398 pKa = 3.87SIGYY402 pKa = 8.77VLAVLYY408 pKa = 10.85SSDD411 pKa = 3.86MKK413 pKa = 10.77PLEE416 pKa = 3.78QRR418 pKa = 11.84IEE420 pKa = 4.51HH421 pKa = 6.81IDD423 pKa = 3.38SEE425 pKa = 4.52FWMDD429 pKa = 3.47EE430 pKa = 3.92KK431 pKa = 10.96EE432 pKa = 4.32KK433 pKa = 10.77EE434 pKa = 3.98ILEE437 pKa = 4.43TSVSQLPDD445 pKa = 3.37YY446 pKa = 10.75VKK448 pKa = 10.83KK449 pKa = 10.54FVSSSIAHH457 pKa = 5.91CTDD460 pKa = 3.27LGNIVKK466 pKa = 10.36SRR468 pKa = 11.84MALNNNISLSRR479 pKa = 11.84EE480 pKa = 4.01LTNDD484 pKa = 2.58EE485 pKa = 4.27VTSVRR490 pKa = 11.84LLASKK495 pKa = 8.86NTEE498 pKa = 3.75FLRR501 pKa = 11.84WLTMTSTIISNFGIYY516 pKa = 10.61NKK518 pKa = 9.99TSLLLEE524 pKa = 4.27YY525 pKa = 9.65EE526 pKa = 4.21KK527 pKa = 11.17SVGTKK532 pKa = 9.64QDD534 pKa = 3.29VMVSKK539 pKa = 9.74PEE541 pKa = 4.0CKK543 pKa = 9.65ISIVTEE549 pKa = 3.59QGMNIPLINDD559 pKa = 3.46WSKK562 pKa = 11.2VPILNEE568 pKa = 3.56MSEE571 pKa = 5.5LFDD574 pKa = 4.53QNWKK578 pKa = 10.36SDD580 pKa = 3.96LIKK583 pKa = 10.59EE584 pKa = 4.3FEE586 pKa = 5.34HH587 pKa = 8.44IDD589 pKa = 3.58DD590 pKa = 3.89FEE592 pKa = 5.02KK593 pKa = 10.95RR594 pKa = 11.84FVTFLTNKK602 pKa = 10.33SGGQKK607 pKa = 9.91SEE609 pKa = 3.98EE610 pKa = 3.99PTLSKK615 pKa = 10.27EE616 pKa = 4.29LKK618 pKa = 9.58GISNARR624 pKa = 11.84VIAFALNRR632 pKa = 11.84NDD634 pKa = 3.39YY635 pKa = 10.71HH636 pKa = 8.54DD637 pKa = 3.89EE638 pKa = 4.02LKK640 pKa = 10.49FIKK643 pKa = 9.93MLMAYY648 pKa = 7.37GKK650 pKa = 10.16CAIRR654 pKa = 11.84FQIDD658 pKa = 2.4RR659 pKa = 11.84RR660 pKa = 11.84ARR662 pKa = 11.84VIVIVPNAIQSSEE675 pKa = 4.12LFLLLGFNVLKK686 pKa = 10.14TNKK689 pKa = 9.3KK690 pKa = 9.53HH691 pKa = 5.81NDD693 pKa = 3.23KK694 pKa = 10.79IAVGKK699 pKa = 10.45QIGNLLDD706 pKa = 4.98ARR708 pKa = 11.84VQMCNTGDD716 pKa = 3.4VSSVKK721 pKa = 10.56NSGDD725 pKa = 3.54MKK727 pKa = 11.29GMDD730 pKa = 3.31AHH732 pKa = 7.02TIPNLTLFLRR742 pKa = 11.84NKK744 pKa = 8.94MIEE747 pKa = 4.08VLFEE751 pKa = 4.91LDD753 pKa = 3.49PSKK756 pKa = 11.1SCSNFFFSEE765 pKa = 4.11DD766 pKa = 3.05KK767 pKa = 10.84EE768 pKa = 4.32YY769 pKa = 10.25TLKK772 pKa = 10.76EE773 pKa = 3.75KK774 pKa = 10.58HH775 pKa = 6.49PKK777 pKa = 9.94FEE779 pKa = 4.81EE780 pKa = 4.13IYY782 pKa = 10.05NRR784 pKa = 11.84NLRR787 pKa = 11.84GVVIHH792 pKa = 6.77AAKK795 pKa = 10.41CLFYY799 pKa = 9.79MFSMNMYY806 pKa = 10.64LEE808 pKa = 4.3DD809 pKa = 4.05HH810 pKa = 6.72FFADD814 pKa = 3.72SQTVSDD820 pKa = 3.68QTFQTGFFATSAQHH834 pKa = 6.21TLFLSLFLLNLEE846 pKa = 4.3RR847 pKa = 11.84KK848 pKa = 9.59FFAKK852 pKa = 10.25LDD854 pKa = 3.63NKK856 pKa = 9.46MISVMHH862 pKa = 6.11SVMGDD867 pKa = 3.4DD868 pKa = 3.43VLEE871 pKa = 4.45VIKK874 pKa = 11.13NGVKK878 pKa = 10.48FPDD881 pKa = 4.05KK882 pKa = 10.52VRR884 pKa = 11.84SWLSLRR890 pKa = 11.84KK891 pKa = 9.51NDD893 pKa = 4.3LAKK896 pKa = 10.83LNYY899 pKa = 9.79EE900 pKa = 4.27EE901 pKa = 4.67EE902 pKa = 4.52LSLSRR907 pKa = 11.84MYY909 pKa = 11.18GVFLQQAALLGVYY922 pKa = 9.48VPYY925 pKa = 9.82PSRR928 pKa = 11.84MSLFCDD934 pKa = 3.27EE935 pKa = 5.69RR936 pKa = 11.84SDD938 pKa = 3.42TTKK941 pKa = 10.84RR942 pKa = 11.84HH943 pKa = 5.04TLDD946 pKa = 3.21MIKK949 pKa = 10.13IVMDD953 pKa = 4.35VISAKK958 pKa = 9.84AQRR961 pKa = 11.84SYY963 pKa = 11.62GIDD966 pKa = 3.09NGLGIGYY973 pKa = 8.44SIWSCHH979 pKa = 5.23RR980 pKa = 11.84SSRR983 pKa = 11.84YY984 pKa = 9.32IYY986 pKa = 10.97SDD988 pKa = 3.23FDD990 pKa = 3.73KK991 pKa = 11.46SKK993 pKa = 10.7VSQLLEE999 pKa = 3.67MDD1001 pKa = 3.37KK1002 pKa = 10.82TFDD1005 pKa = 3.46FNFIVSHH1012 pKa = 7.29DD1013 pKa = 3.88EE1014 pKa = 4.09TEE1016 pKa = 3.82KK1017 pKa = 10.73SIRR1020 pKa = 11.84FIYY1023 pKa = 9.99PFVTVMCSPISWPMLTFVMNDD1044 pKa = 2.4ISDD1047 pKa = 3.84PNKK1050 pKa = 10.27FITYY1054 pKa = 9.27KK1055 pKa = 10.64SKK1057 pKa = 11.19AFTSLNGDD1065 pKa = 3.66GAYY1068 pKa = 9.87MLINQMFFTSNEE1080 pKa = 3.36QHH1082 pKa = 5.79MFQFVDD1088 pKa = 3.91YY1089 pKa = 10.22VKK1091 pKa = 9.77HH1092 pKa = 4.8QSKK1095 pKa = 10.24IVEE1098 pKa = 4.33LKK1100 pKa = 10.91LNSNFLNWEE1109 pKa = 4.07ARR1111 pKa = 11.84HH1112 pKa = 5.48HH1113 pKa = 5.89WGFTFGEE1120 pKa = 3.93HH1121 pKa = 6.87LLRR1124 pKa = 11.84FKK1126 pKa = 10.84RR1127 pKa = 11.84LRR1129 pKa = 11.84HH1130 pKa = 4.77LTEE1133 pKa = 3.64SRR1135 pKa = 11.84KK1136 pKa = 10.1NEE1138 pKa = 4.1LGLGDD1143 pKa = 4.04IEE1145 pKa = 5.34VMVHH1149 pKa = 6.29NLNKK1153 pKa = 10.4YY1154 pKa = 9.73LDD1156 pKa = 3.98GNRR1159 pKa = 11.84VLLSFNSISVLKK1171 pKa = 9.74AHH1173 pKa = 7.08KK1174 pKa = 10.3IEE1176 pKa = 4.08VPYY1179 pKa = 11.24GLMYY1183 pKa = 10.97ANHH1186 pKa = 6.26NRR1188 pKa = 11.84SKK1190 pKa = 10.27IDD1192 pKa = 3.0QSLTVRR1198 pKa = 11.84TEE1200 pKa = 3.93SLEE1203 pKa = 3.73EE1204 pKa = 3.64RR1205 pKa = 11.84VYY1207 pKa = 11.27LDD1209 pKa = 4.57SIFLKK1214 pKa = 10.93HH1215 pKa = 5.9MLDD1218 pKa = 3.82YY1219 pKa = 10.03KK1220 pKa = 9.81TVPKK1224 pKa = 10.48DD1225 pKa = 3.48LEE1227 pKa = 4.25VLKK1230 pKa = 9.34THH1232 pKa = 7.02ALCSVRR1238 pKa = 11.84LRR1240 pKa = 11.84IYY1242 pKa = 11.02GDD1244 pKa = 3.34FDD1246 pKa = 3.98YY1247 pKa = 11.26ACEE1250 pKa = 3.98KK1251 pKa = 10.97DD1252 pKa = 4.49GVIEE1256 pKa = 4.32PSSDD1260 pKa = 2.99AQFNIILPFLPGYY1273 pKa = 9.6HH1274 pKa = 6.68LNSAYY1279 pKa = 10.4GKK1281 pKa = 9.88LFLYY1285 pKa = 9.0STLPTVHH1292 pKa = 7.12DD1293 pKa = 4.13RR1294 pKa = 11.84DD1295 pKa = 3.41ISGTLGEE1302 pKa = 4.42ITGSLGASFDD1312 pKa = 3.11VDD1314 pKa = 3.3AAIEE1318 pKa = 4.19FGAHH1322 pKa = 5.06VFNINPSLVDD1332 pKa = 3.39AAGTAIGIPQGLLNHH1347 pKa = 6.22YY1348 pKa = 9.49KK1349 pKa = 10.41NLVNAFVTNNFNLKK1363 pKa = 9.11YY1364 pKa = 10.43HH1365 pKa = 6.84SIFLNVKK1372 pKa = 8.86YY1373 pKa = 10.56FGLNGSLKK1381 pKa = 10.29HH1382 pKa = 6.07FSTFGDD1388 pKa = 3.68YY1389 pKa = 10.71SSRR1392 pKa = 11.84LVRR1395 pKa = 11.84FDD1397 pKa = 5.79LIHH1400 pKa = 7.23KK1401 pKa = 9.66LDD1403 pKa = 4.03RR1404 pKa = 11.84YY1405 pKa = 10.3HH1406 pKa = 6.84NVFVRR1411 pKa = 11.84DD1412 pKa = 4.6FIFAYY1417 pKa = 9.42IHH1419 pKa = 5.98EE1420 pKa = 4.78LNGRR1424 pKa = 11.84RR1425 pKa = 11.84VYY1427 pKa = 11.07LDD1429 pKa = 3.58YY1430 pKa = 11.25SLHH1433 pKa = 6.15SLLLVMSRR1441 pKa = 11.84GSIKK1445 pKa = 10.67YY1446 pKa = 7.16FTSHH1450 pKa = 7.3LSQLFNPMLTLEE1462 pKa = 4.52FDD1464 pKa = 3.42

Molecular weight:
168.85 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

9107

209

1464

758.9

87.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.964 ± 0.269

1.482 ± 0.136

6.248 ± 0.195

5.776 ± 0.331

6.358 ± 0.319

3.997 ± 0.255

2.569 ± 0.177

7.05 ± 0.243

6.665 ± 0.243

10.355 ± 0.392

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.136

6.995 ± 0.293

3.25 ± 0.162

3.118 ± 0.108

4.085 ± 0.161

8.773 ± 0.514

5.897 ± 0.463

6.127 ± 0.161

0.747 ± 0.086

4.282 ± 0.346

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski