Chicken anemia virus (isolate Germany Cuxhaven-1) (CAV)

Taxonomy: Viruses; Anelloviridae; Gyrovirus; Chicken anemia virus

Average proteome isoelectric point is 8.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q99152|VP3_CAVC1 Apoptin OS=Chicken anemia virus (isolate Germany Cuxhaven-1) OX=73475 GN=VP3 PE=1 SV=1
MM1 pKa = 7.54HH2 pKa = 7.49GNGGQPAAGGSEE14 pKa = 4.12SALSRR19 pKa = 11.84EE20 pKa = 4.43GQPGPSGAAQGQVISNEE37 pKa = 3.83RR38 pKa = 11.84SPRR41 pKa = 11.84RR42 pKa = 11.84YY43 pKa = 8.28STRR46 pKa = 11.84TINGVQATNKK56 pKa = 7.8FTAVGNPSLQRR67 pKa = 11.84DD68 pKa = 3.84PDD70 pKa = 3.55WYY72 pKa = 9.71RR73 pKa = 11.84WNYY76 pKa = 8.1NHH78 pKa = 7.22SIAVWLRR85 pKa = 11.84EE86 pKa = 4.05CSRR89 pKa = 11.84SHH91 pKa = 7.08AKK93 pKa = 9.51ICNCGQFRR101 pKa = 11.84KK102 pKa = 9.59HH103 pKa = 5.49WFQEE107 pKa = 4.39CAGLEE112 pKa = 4.08DD113 pKa = 5.22RR114 pKa = 11.84STQASLEE121 pKa = 4.13EE122 pKa = 5.15AILRR126 pKa = 11.84PLRR129 pKa = 11.84VQGKK133 pKa = 7.45RR134 pKa = 11.84AKK136 pKa = 10.3RR137 pKa = 11.84KK138 pKa = 9.49LDD140 pKa = 3.32YY141 pKa = 10.37HH142 pKa = 6.72YY143 pKa = 11.12SQPTPNRR150 pKa = 11.84KK151 pKa = 8.91KK152 pKa = 9.96VYY154 pKa = 8.99KK155 pKa = 8.26TVRR158 pKa = 11.84WQDD161 pKa = 3.2EE162 pKa = 4.23LADD165 pKa = 4.3RR166 pKa = 11.84EE167 pKa = 4.29ADD169 pKa = 3.67FTPSEE174 pKa = 4.2EE175 pKa = 4.57DD176 pKa = 3.16GGTTSSDD183 pKa = 3.08FDD185 pKa = 3.81EE186 pKa = 6.39DD187 pKa = 3.83INFDD191 pKa = 3.22IGGDD195 pKa = 3.55SGIVDD200 pKa = 4.09EE201 pKa = 4.93LLGRR205 pKa = 11.84PFTTPAPVRR214 pKa = 11.84IVV216 pKa = 2.92

Molecular weight: 24.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q99153|CAPSD_CAVC1 Capsid protein OS=Chicken anemia virus (isolate Germany Cuxhaven-1) OX=73475 GN=VP1 PE=2 SV=1
MM1 pKa = 7.55ARR3 pKa = 11.84RR4 pKa = 11.84ARR6 pKa = 11.84RR7 pKa = 11.84PRR9 pKa = 11.84GRR11 pKa = 11.84FYY13 pKa = 11.1SFRR16 pKa = 11.84RR17 pKa = 11.84GRR19 pKa = 11.84WHH21 pKa = 5.72HH22 pKa = 6.5LKK24 pKa = 10.48RR25 pKa = 11.84LRR27 pKa = 11.84RR28 pKa = 11.84RR29 pKa = 11.84YY30 pKa = 9.6KK31 pKa = 8.5FRR33 pKa = 11.84HH34 pKa = 5.64RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84QRR39 pKa = 11.84YY40 pKa = 7.89RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84AFRR46 pKa = 11.84KK47 pKa = 9.08AFHH50 pKa = 6.5NPRR53 pKa = 11.84PGTYY57 pKa = 9.13SVRR60 pKa = 11.84LPNPQSTMTIRR71 pKa = 11.84FQGVIFLTEE80 pKa = 3.98GLILPKK86 pKa = 10.65NSTAGGYY93 pKa = 9.63ADD95 pKa = 3.85HH96 pKa = 7.07MYY98 pKa = 10.18GARR101 pKa = 11.84VAKK104 pKa = 10.39ISVNLKK110 pKa = 9.73EE111 pKa = 4.38FLLASMNLTYY121 pKa = 10.5VSKK124 pKa = 10.64IGGPIAGEE132 pKa = 4.38LIADD136 pKa = 4.38GSKK139 pKa = 10.15SQAADD144 pKa = 2.93NWPNCWLPLDD154 pKa = 4.28NNVPSATPSAWWRR167 pKa = 11.84WALMMMQPTDD177 pKa = 2.89SCRR180 pKa = 11.84FFNHH184 pKa = 6.69PKK186 pKa = 10.56QMTLQDD192 pKa = 3.9MGRR195 pKa = 11.84MFGGWHH201 pKa = 7.18LFRR204 pKa = 11.84HH205 pKa = 5.88IEE207 pKa = 4.02TRR209 pKa = 11.84FQLLATKK216 pKa = 10.66NEE218 pKa = 4.19GSFSPVASLLSQGEE232 pKa = 4.35YY233 pKa = 8.83LTRR236 pKa = 11.84RR237 pKa = 11.84DD238 pKa = 3.7DD239 pKa = 3.65VKK241 pKa = 11.26YY242 pKa = 11.07SSDD245 pKa = 3.69HH246 pKa = 4.63QNRR249 pKa = 11.84WQKK252 pKa = 10.73GGQPMTGGIAYY263 pKa = 7.3ATGKK267 pKa = 8.59MRR269 pKa = 11.84PDD271 pKa = 3.42EE272 pKa = 4.15QQYY275 pKa = 9.59PAMPPDD281 pKa = 4.01PPIITATTAQGTQVRR296 pKa = 11.84CMNSTQAWWSWDD308 pKa = 3.04TYY310 pKa = 11.0MSFATLTALGAQWSFPPGQRR330 pKa = 11.84SVSRR334 pKa = 11.84RR335 pKa = 11.84SFNHH339 pKa = 5.11HH340 pKa = 6.41KK341 pKa = 10.76ARR343 pKa = 11.84GAGDD347 pKa = 3.45PKK349 pKa = 9.58GQRR352 pKa = 11.84WHH354 pKa = 6.22TLVPLGTEE362 pKa = 4.78TITDD366 pKa = 3.77SYY368 pKa = 10.57MSAPASEE375 pKa = 5.05LDD377 pKa = 3.66TNFFTLYY384 pKa = 9.98VAQGTNKK391 pKa = 9.19SQQYY395 pKa = 10.29KK396 pKa = 10.49FGTATYY402 pKa = 9.86ALKK405 pKa = 10.54EE406 pKa = 3.97PVMKK410 pKa = 10.42SDD412 pKa = 2.5AWAVVRR418 pKa = 11.84VQSVWQLGNRR428 pKa = 11.84QRR430 pKa = 11.84PYY432 pKa = 10.08PWDD435 pKa = 3.8VNWANSTMYY444 pKa = 10.02WGTQPP449 pKa = 4.53

Molecular weight: 51.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

786

121

449

262.0

29.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.761 ± 0.377

1.399 ± 0.593

4.58 ± 0.816

3.944 ± 1.31

3.69 ± 0.626

7.379 ± 1.078

2.29 ± 0.397

3.562 ± 0.71

4.326 ± 0.172

6.234 ± 0.539

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.545 ± 1.107

4.198 ± 0.276

7.379 ± 1.377

5.216 ± 0.953

9.924 ± 0.483

8.015 ± 0.785

7.506 ± 1.253

3.944 ± 0.448

2.926 ± 0.893

3.181 ± 0.7
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski