Trichophyton interdigitale (strain MR816)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton; Trichophyton interdigitale

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8217 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A059JH20|A0A059JH20_TRIIM Aminopeptidase OS=Trichophyton interdigitale (strain MR816) OX=1215338 GN=H109_01429 PE=3 SV=1
MM1 pKa = 7.73ADD3 pKa = 3.18SVSIYY8 pKa = 10.87DD9 pKa = 3.84EE10 pKa = 4.41IEE12 pKa = 4.35IEE14 pKa = 5.66DD15 pKa = 3.7MTFDD19 pKa = 3.82PVLQIYY25 pKa = 9.16HH26 pKa = 5.73YY27 pKa = 9.36PCPCGDD33 pKa = 3.29RR34 pKa = 11.84FEE36 pKa = 6.13IGLADD41 pKa = 3.99LRR43 pKa = 11.84DD44 pKa = 3.96GEE46 pKa = 5.15DD47 pKa = 2.8IGVCPSCSLMIRR59 pKa = 11.84VIFDD63 pKa = 3.33EE64 pKa = 5.08ADD66 pKa = 3.39LPKK69 pKa = 10.6DD70 pKa = 3.45DD71 pKa = 4.72SGNNGGVATAITAA84 pKa = 3.74

Molecular weight: 9.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A059JJK7|A0A059JJK7_TRIIM Uncharacterized protein OS=Trichophyton interdigitale (strain MR816) OX=1215338 GN=H109_00415 PE=4 SV=1
MM1 pKa = 7.94PSQKK5 pKa = 10.41SFRR8 pKa = 11.84TKK10 pKa = 10.38QKK12 pKa = 9.84LAKK15 pKa = 9.55AQKK18 pKa = 8.59QNRR21 pKa = 11.84PIPQWIRR28 pKa = 11.84LRR30 pKa = 11.84TGNTIRR36 pKa = 4.53

Molecular weight: 4.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7993

224

8217

4056786

36

7900

493.7

54.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.201 ± 0.023

1.218 ± 0.01

5.616 ± 0.021

6.295 ± 0.026

3.6 ± 0.018

6.66 ± 0.026

2.415 ± 0.011

5.132 ± 0.02

5.158 ± 0.021

8.773 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.135 ± 0.009

3.836 ± 0.012

6.223 ± 0.032

4.135 ± 0.025

6.125 ± 0.023

8.744 ± 0.031

5.888 ± 0.016

5.822 ± 0.02

1.29 ± 0.011

2.734 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski