Acetivibrio saccincola

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillosp

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3020 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K9E8F9|A0A2K9E8F9_9FIRM Uncharacterized protein OS=Acetivibrio saccincola OX=1677857 GN=B9R14_04590 PE=4 SV=1
MM1 pKa = 6.99MVCLFIFSAFSLLNITGVLAEE22 pKa = 4.34EE23 pKa = 4.91DD24 pKa = 4.0VLSVLDD30 pKa = 3.95FEE32 pKa = 6.3DD33 pKa = 3.57YY34 pKa = 10.57FYY36 pKa = 11.61YY37 pKa = 10.65EE38 pKa = 4.61DD39 pKa = 3.7GNYY42 pKa = 10.23VLTSDD47 pKa = 3.92IVVDD51 pKa = 3.29SSFRR55 pKa = 11.84IDD57 pKa = 3.06GHH59 pKa = 4.7TVVLNGYY66 pKa = 9.93SMTVEE71 pKa = 4.16GDD73 pKa = 3.42LCIDD77 pKa = 4.03NGSLDD82 pKa = 4.23LGSGSLTVNGDD93 pKa = 3.41FYY95 pKa = 11.2INGFDD100 pKa = 3.54TSNPAVLDD108 pKa = 3.7INNGNLIIEE117 pKa = 4.75GNFDD121 pKa = 3.34TYY123 pKa = 11.85DD124 pKa = 3.44NVILYY129 pKa = 7.3MVQEE133 pKa = 3.91NDD135 pKa = 3.24YY136 pKa = 11.24VLVHH140 pKa = 6.79KK141 pKa = 10.54DD142 pKa = 3.38FYY144 pKa = 10.92FNSFIPHH151 pKa = 6.58GDD153 pKa = 3.35YY154 pKa = 10.99LINGTLEE161 pKa = 4.26VKK163 pKa = 10.7GDD165 pKa = 3.75FYY167 pKa = 11.75DD168 pKa = 4.57FSKK171 pKa = 11.57GNFLPSQNHH180 pKa = 4.62RR181 pKa = 11.84VVLSGEE187 pKa = 3.95DD188 pKa = 3.39VQYY191 pKa = 10.33VTFEE195 pKa = 4.11YY196 pKa = 10.54PEE198 pKa = 4.4LSSFNILEE206 pKa = 4.09LTKK209 pKa = 10.19PLEE212 pKa = 4.05TGYY215 pKa = 10.73VFSHH219 pKa = 5.26TPVWNTLIEE228 pKa = 4.86PGTSFKK234 pKa = 11.09PGDD237 pKa = 3.74LDD239 pKa = 4.35GNGTVDD245 pKa = 3.47STDD248 pKa = 2.89ATILKK253 pKa = 9.72RR254 pKa = 11.84YY255 pKa = 8.17IVSIIDD261 pKa = 4.29EE262 pKa = 4.42IPAGNDD268 pKa = 3.1AADD271 pKa = 3.91LNGDD275 pKa = 3.78GDD277 pKa = 4.43IDD279 pKa = 4.17SLDD282 pKa = 3.53YY283 pKa = 10.95TLLNRR288 pKa = 11.84FILGMITEE296 pKa = 4.78FPVNRR301 pKa = 4.3

Molecular weight: 33.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K9E631|A0A2K9E631_9FIRM Arginine decarboxylase OS=Acetivibrio saccincola OX=1677857 GN=speA2 PE=3 SV=1
MM1 pKa = 7.45LRR3 pKa = 11.84TYY5 pKa = 9.8QPKK8 pKa = 9.46KK9 pKa = 8.28RR10 pKa = 11.84QRR12 pKa = 11.84KK13 pKa = 8.39KK14 pKa = 8.49EE15 pKa = 3.5HH16 pKa = 6.11GFRR19 pKa = 11.84KK20 pKa = 9.77RR21 pKa = 11.84MKK23 pKa = 8.64TSNGRR28 pKa = 11.84KK29 pKa = 7.18VLRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.26GRR39 pKa = 11.84KK40 pKa = 8.78VLSAA44 pKa = 4.05

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3020

0

3020

967809

29

3652

320.5

36.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.703 ± 0.043

1.063 ± 0.015

5.81 ± 0.034

7.985 ± 0.042

4.385 ± 0.033

6.643 ± 0.048

1.469 ± 0.018

9.06 ± 0.039

8.574 ± 0.054

8.499 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.462 ± 0.019

5.569 ± 0.04

3.286 ± 0.032

2.393 ± 0.024

4.047 ± 0.033

6.111 ± 0.033

4.946 ± 0.048

6.832 ± 0.039

0.877 ± 0.015

4.287 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski