Flagellimonas maritima

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flagellimonas

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3376 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z4LUC1|A0A2Z4LUC1_9FLAO Acyl-CoA 6-desaturase OS=Flagellimonas maritima OX=1383885 GN=HME9304_02346 PE=4 SV=1
MM1 pKa = 7.48KK2 pKa = 10.23KK3 pKa = 10.32FYY5 pKa = 11.08ALFPILGLFFIACSDD20 pKa = 3.85DD21 pKa = 5.28DD22 pKa = 4.14EE23 pKa = 5.17TPSEE27 pKa = 4.39TTPTPDD33 pKa = 4.62PIVYY37 pKa = 9.36TSGSADD43 pKa = 3.32FSNYY47 pKa = 7.91VAVGNSLTAGFSDD60 pKa = 3.33NALFRR65 pKa = 11.84AGQEE69 pKa = 3.63ASFPNMLAANFALAGGGTFEE89 pKa = 4.9IPFMADD95 pKa = 2.77NLGGATINGQTDD107 pKa = 3.5ANMDD111 pKa = 3.77GAPDD115 pKa = 3.19IGNRR119 pKa = 11.84LILLFTPDD127 pKa = 4.09GPAPTPKK134 pKa = 9.68TGVGTTEE141 pKa = 3.81ITDD144 pKa = 3.81KK145 pKa = 11.37LSGPFNNMGVPGSKK159 pKa = 9.74SYY161 pKa = 11.06EE162 pKa = 3.98LLAPGYY168 pKa = 10.64GSLAGLAVGAANPYY182 pKa = 9.37FVRR185 pKa = 11.84FSSGEE190 pKa = 3.76AATVIGDD197 pKa = 4.28AAAQNPTFFSLWTGSNDD214 pKa = 2.65ILLYY218 pKa = 9.5ATSGGTGTFQSDD230 pKa = 3.93PMVSPADD237 pKa = 3.62YY238 pKa = 11.01ARR240 pKa = 11.84NDD242 pKa = 3.12ITNPTVFAGALDD254 pKa = 4.0AALQALTAGDD264 pKa = 3.88TDD266 pKa = 4.1GVIANLPNVTDD277 pKa = 3.53IPFFTTVPHH286 pKa = 6.28NPVPLDD292 pKa = 3.49EE293 pKa = 4.6ATAAQLNAAYY303 pKa = 10.31ALYY306 pKa = 10.83NGGLLQAQGFNLISEE321 pKa = 4.49EE322 pKa = 4.08EE323 pKa = 4.24VAKK326 pKa = 9.79RR327 pKa = 11.84TISFTAGEE335 pKa = 4.25GNAVVLLDD343 pKa = 4.76EE344 pKa = 5.72DD345 pKa = 4.17LTDD348 pKa = 3.73LTGVNPALINMRR360 pKa = 11.84QATEE364 pKa = 3.78EE365 pKa = 4.13DD366 pKa = 4.36LLVLTARR373 pKa = 11.84TFIGTEE379 pKa = 3.95AVVGDD384 pKa = 3.93PTTINGIAVPLADD397 pKa = 3.3QWVLTPEE404 pKa = 3.87EE405 pKa = 3.86QANIEE410 pKa = 4.34TALTAYY416 pKa = 9.87NQTITALATQYY427 pKa = 11.6DD428 pKa = 4.4LALVDD433 pKa = 4.23VNSLLSEE440 pKa = 3.95LRR442 pKa = 11.84EE443 pKa = 4.05NGIPLADD450 pKa = 4.01GSTVTATFATGGGFSLDD467 pKa = 3.48GVHH470 pKa = 7.01PSPRR474 pKa = 11.84GYY476 pKa = 10.95AIIANAFVAAINAKK490 pKa = 10.13YY491 pKa = 10.42GSNLPGVNPLDD502 pKa = 3.79YY503 pKa = 10.61TGLYY507 pKa = 9.52IDD509 pKa = 4.39

Molecular weight: 52.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z4LSW2|A0A2Z4LSW2_9FLAO Uncharacterized protein OS=Flagellimonas maritima OX=1383885 GN=HME9304_01677 PE=4 SV=1
MM1 pKa = 8.08RR2 pKa = 11.84GQLQVASNNPKK13 pKa = 9.33FKK15 pKa = 10.75FFILHH20 pKa = 6.37PSPFIHH26 pKa = 6.62HH27 pKa = 7.13PSSITLHH34 pKa = 6.19PSPFIHH40 pKa = 6.61HH41 pKa = 7.03PSSVTHH47 pKa = 6.43HH48 pKa = 6.81PSPFTRR54 pKa = 11.84HH55 pKa = 5.94PSPIIRR61 pKa = 11.84HH62 pKa = 5.71PSPVTRR68 pKa = 11.84HH69 pKa = 5.8PSPVTRR75 pKa = 11.84HH76 pKa = 5.82PSPFTRR82 pKa = 11.84HH83 pKa = 5.94LSPFARR89 pKa = 11.84HH90 pKa = 6.24LSPIPRR96 pKa = 11.84HH97 pKa = 5.56PSPMILHH104 pKa = 6.74PSPFTRR110 pKa = 11.84HH111 pKa = 5.92RR112 pKa = 11.84SPFTRR117 pKa = 11.84HH118 pKa = 5.94PSPFTRR124 pKa = 11.84HH125 pKa = 5.12PP126 pKa = 3.52

Molecular weight: 14.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3376

0

3376

1140652

29

4759

337.9

38.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.15 ± 0.037

0.733 ± 0.013

5.793 ± 0.048

6.713 ± 0.042

5.339 ± 0.032

6.729 ± 0.045

1.751 ± 0.021

7.786 ± 0.037

7.531 ± 0.069

9.436 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.022

5.992 ± 0.036

3.509 ± 0.024

3.268 ± 0.02

3.709 ± 0.025

6.549 ± 0.034

5.596 ± 0.05

6.146 ± 0.031

1.096 ± 0.017

3.953 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski