Acinetobacter phage VB_ApiP_XC38

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Schitoviridae; Presleyvirus; unclassified Presleyvirus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 96 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5P8PR49|A0A5P8PR49_9CAUD Uncharacterized protein OS=Acinetobacter phage VB_ApiP_XC38 OX=2655002 GN=VBApiPXC38_62 PE=4 SV=1
MM1 pKa = 7.34SLFVAWAAKK10 pKa = 8.45VTVINYY16 pKa = 9.57LGIAISVPTEE26 pKa = 3.69FLEE29 pKa = 4.25NGYY32 pKa = 9.78IAMDD36 pKa = 3.23VDD38 pKa = 4.09GTVV41 pKa = 2.7

Molecular weight: 4.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5P8PR51|A0A5P8PR51_9CAUD Uncharacterized protein OS=Acinetobacter phage VB_ApiP_XC38 OX=2655002 GN=VBApiPXC38_49 PE=4 SV=1
MM1 pKa = 7.19YY2 pKa = 9.69RR3 pKa = 11.84DD4 pKa = 3.44QEE6 pKa = 4.41IISFMVAILMSCVTAYY22 pKa = 10.77VSIVRR27 pKa = 11.84KK28 pKa = 9.47VMRR31 pKa = 11.84KK32 pKa = 9.04RR33 pKa = 11.84GKK35 pKa = 8.18ITKK38 pKa = 9.0LWLSSEE44 pKa = 4.16VMMCLLAFLIALEE57 pKa = 4.92LYY59 pKa = 9.46PHH61 pKa = 7.28LASLMPAFMTKK72 pKa = 10.29AIFASTCVHH81 pKa = 5.64MSSRR85 pKa = 11.84LVMFLEE91 pKa = 4.16EE92 pKa = 4.02RR93 pKa = 11.84VNRR96 pKa = 11.84ALSSSS101 pKa = 3.42

Molecular weight: 11.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

96

0

96

24159

30

3323

251.7

28.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.75 ± 0.453

0.811 ± 0.162

5.977 ± 0.152

6.391 ± 0.263

3.427 ± 0.214

5.932 ± 0.179

1.838 ± 0.195

6.027 ± 0.241

6.726 ± 0.266

8.763 ± 0.218

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.736 ± 0.196

5.691 ± 0.233

3.564 ± 0.293

4.607 ± 0.288

4.143 ± 0.169

6.465 ± 0.494

6.817 ± 0.485

6.759 ± 0.214

1.018 ± 0.094

3.556 ± 0.264
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski