Bovine gammaherpesvirus 6

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Macavirus

Average proteome isoelectric point is 6.68

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 79 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A060CTX9|A0A060CTX9_9GAMA Interleukin-10 domain protein OS=Bovine gammaherpesvirus 6 OX=1504288 GN=Bov2.5 PE=4 SV=1
MM1 pKa = 7.52GSSSYY6 pKa = 10.18CQNSFHH12 pKa = 7.23YY13 pKa = 9.48EE14 pKa = 3.94HH15 pKa = 6.54QCAHH19 pKa = 5.98SSKK22 pKa = 10.81DD23 pKa = 2.77IWLEE27 pKa = 3.83NQRR30 pKa = 11.84SFVNRR35 pKa = 11.84SPLEE39 pKa = 4.08SQNLANFLYY48 pKa = 10.5DD49 pKa = 4.41DD50 pKa = 4.16SDD52 pKa = 3.98FSFSEE57 pKa = 4.51FEE59 pKa = 4.2QNSTIASFDD68 pKa = 3.54SLLCDD73 pKa = 4.31DD74 pKa = 4.98VSTNMDD80 pKa = 3.36TNMDD84 pKa = 4.43EE85 pKa = 5.63LPLASDD91 pKa = 3.53NQDD94 pKa = 4.09AISLSLDD101 pKa = 3.59PGAKK105 pKa = 9.34PCSTEE110 pKa = 3.64KK111 pKa = 10.67LPQIRR116 pKa = 11.84RR117 pKa = 11.84GIDD120 pKa = 3.25YY121 pKa = 11.04SLVEE125 pKa = 4.36SLDD128 pKa = 3.82TCSSGQLNNKK138 pKa = 7.52NCKK141 pKa = 9.16PVSNEE146 pKa = 3.39QLCFGTCFTTILKK159 pKa = 8.96QLCFFF164 pKa = 5.33

Molecular weight: 18.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A060D3N3|A0A060D3N3_9GAMA Major capsid protein OS=Bovine gammaherpesvirus 6 OX=1504288 GN=MCP PE=3 SV=1
MM1 pKa = 7.18YY2 pKa = 9.9RR3 pKa = 11.84YY4 pKa = 9.39QADD7 pKa = 3.38KK8 pKa = 11.29GIVFALSGLPIKK20 pKa = 10.67RR21 pKa = 11.84KK22 pKa = 9.25VEE24 pKa = 4.02GVKK27 pKa = 10.18AHH29 pKa = 5.46QKK31 pKa = 10.51VYY33 pKa = 10.54TKK35 pKa = 10.78LLQFTTFTKK44 pKa = 10.61LSKK47 pKa = 10.38FLGIIHH53 pKa = 7.02PCPCKK58 pKa = 10.84VKK60 pKa = 10.28FKK62 pKa = 11.17LFFEE66 pKa = 4.52VTLGNRR72 pKa = 11.84IADD75 pKa = 3.88CVVLAVQGEE84 pKa = 4.08NRR86 pKa = 11.84VCYY89 pKa = 10.01VVEE92 pKa = 5.8LKK94 pKa = 9.69TCMNNTFALSAVQSAQMLQGLAQLSDD120 pKa = 3.26STKK123 pKa = 10.95YY124 pKa = 10.54LFQNAPVDD132 pKa = 3.87NQNWTIVAHH141 pKa = 6.72LVFKK145 pKa = 10.71SQSSLKK151 pKa = 8.9TIHH154 pKa = 6.36VEE156 pKa = 3.86QPKK159 pKa = 10.73LIFSSMLTRR168 pKa = 11.84VDD170 pKa = 3.08KK171 pKa = 11.07LAAFLHH177 pKa = 5.39TRR179 pKa = 11.84EE180 pKa = 4.53DD181 pKa = 3.23ATFRR185 pKa = 11.84QLLRR189 pKa = 11.84SNKK192 pKa = 9.7AIKK195 pKa = 9.95EE196 pKa = 3.96VAKK199 pKa = 10.27RR200 pKa = 11.84KK201 pKa = 9.42RR202 pKa = 11.84VLGTKK207 pKa = 10.1SKK209 pKa = 10.91ARR211 pKa = 11.84AQNKK215 pKa = 8.75PPQNPRR221 pKa = 11.84VQKK224 pKa = 10.48KK225 pKa = 9.2RR226 pKa = 11.84ALVQKK231 pKa = 10.14ARR233 pKa = 11.84CRR235 pKa = 11.84EE236 pKa = 3.9

Molecular weight: 26.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

79

0

79

35266

20

2614

446.4

50.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.511 ± 0.185

2.6 ± 0.183

4.358 ± 0.127

5.745 ± 0.238

5.254 ± 0.18

4.307 ± 0.176

2.572 ± 0.084

5.674 ± 0.151

6.474 ± 0.218

10.302 ± 0.29

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.22 ± 0.131

5.405 ± 0.146

4.979 ± 0.189

4.616 ± 0.213

3.527 ± 0.176

8.654 ± 0.251

5.717 ± 0.238

6.335 ± 0.222

1.08 ± 0.066

3.669 ± 0.153
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski