Pelargonium line pattern virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Pelarspovirus

Average proteome isoelectric point is 8.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U5XKN5|U5XKN5_9TOMB p9.7 OS=Pelargonium line pattern virus OX=167019 GN=p9.7 PE=4 SV=1
MM1 pKa = 7.89EE2 pKa = 4.57YY3 pKa = 10.27PRR5 pKa = 11.84VHH7 pKa = 6.62LAILSVLISSQLLIKK22 pKa = 9.6WNLWSISISDD32 pKa = 4.8FLPQPHH38 pKa = 6.55SLHH41 pKa = 6.85PNLLVCIVLCIFFSSVLSQGQSYY64 pKa = 10.14SYY66 pKa = 11.21SYY68 pKa = 11.15FSTSTSDD75 pKa = 3.02KK76 pKa = 10.0FISVAVGNGGQGG88 pKa = 2.97

Molecular weight: 9.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U5XKN5|U5XKN5_9TOMB p9.7 OS=Pelargonium line pattern virus OX=167019 GN=p9.7 PE=4 SV=1
MM1 pKa = 7.24AHH3 pKa = 6.24YY4 pKa = 10.09FGEE7 pKa = 4.27ALQLGLFVAKK17 pKa = 10.43ASCWASKK24 pKa = 10.32EE25 pKa = 3.91LALLGPNLAWIATRR39 pKa = 11.84PLRR42 pKa = 11.84NDD44 pKa = 2.62ANAILKK50 pKa = 10.38RR51 pKa = 11.84IGVHH55 pKa = 6.09GLAKK59 pKa = 10.11IPCNFDD65 pKa = 3.31SDD67 pKa = 4.21EE68 pKa = 4.01LTIANDD74 pKa = 4.52CIVKK78 pKa = 10.05SDD80 pKa = 3.91RR81 pKa = 11.84NLEE84 pKa = 4.16DD85 pKa = 3.23EE86 pKa = 4.77SIVVEE91 pKa = 4.23EE92 pKa = 4.31VEE94 pKa = 4.27EE95 pKa = 4.74GEE97 pKa = 4.29EE98 pKa = 4.02KK99 pKa = 10.62KK100 pKa = 10.55KK101 pKa = 10.75SKK103 pKa = 10.39KK104 pKa = 5.49VTRR107 pKa = 11.84RR108 pKa = 11.84RR109 pKa = 11.84VKK111 pKa = 9.8TKK113 pKa = 8.61PTFAAVLAADD123 pKa = 3.97AKK125 pKa = 10.77NYY127 pKa = 9.63YY128 pKa = 10.16GCLPSATRR136 pKa = 11.84ANEE139 pKa = 3.92LSVMKK144 pKa = 10.33YY145 pKa = 10.09LVSKK149 pKa = 10.14CQEE152 pKa = 3.84HH153 pKa = 7.16KK154 pKa = 10.55LTITQTRR161 pKa = 11.84EE162 pKa = 3.4VSAMAFALTFTPDD175 pKa = 3.24EE176 pKa = 4.14NDD178 pKa = 3.19KK179 pKa = 11.35LIYY182 pKa = 10.08KK183 pKa = 8.8YY184 pKa = 11.06LNSTEE189 pKa = 4.09VFEE192 pKa = 5.68RR193 pKa = 11.84RR194 pKa = 11.84VDD196 pKa = 3.49YY197 pKa = 11.25AKK199 pKa = 10.97ARR201 pKa = 11.84GVDD204 pKa = 3.48KK205 pKa = 11.01CWFEE209 pKa = 3.79LLKK212 pKa = 10.83RR213 pKa = 11.84PWHH216 pKa = 5.1ARR218 pKa = 11.84AWRR221 pKa = 11.84RR222 pKa = 11.84VVGRR226 pKa = 11.84IFGLPEE232 pKa = 3.33QQAFEE237 pKa = 4.2FVKK240 pKa = 9.48XGCLMDD246 pKa = 3.51TCGVDD251 pKa = 3.08TKK253 pKa = 10.75VYY255 pKa = 9.7RR256 pKa = 11.84GEE258 pKa = 4.04HH259 pKa = 4.88RR260 pKa = 11.84WVKK263 pKa = 9.32EE264 pKa = 3.48FRR266 pKa = 11.84GAANPKK272 pKa = 9.12PRR274 pKa = 11.84RR275 pKa = 11.84LYY277 pKa = 10.3KK278 pKa = 10.25ISGVSPEE285 pKa = 4.3VRR287 pKa = 11.84WGVHH291 pKa = 4.89NNSFVNLRR299 pKa = 11.84RR300 pKa = 11.84GLMEE304 pKa = 3.41RR305 pKa = 11.84VFYY308 pKa = 10.13VEE310 pKa = 4.83RR311 pKa = 11.84SGEE314 pKa = 4.12LLPCPSPEE322 pKa = 3.79AGLFKK327 pKa = 10.86RR328 pKa = 11.84LFNKK332 pKa = 9.53VGRR335 pKa = 11.84RR336 pKa = 11.84VIRR339 pKa = 11.84FCGHH343 pKa = 6.88HH344 pKa = 6.24SPIPRR349 pKa = 11.84ASYY352 pKa = 9.84PGMFQGRR359 pKa = 11.84KK360 pKa = 5.56RR361 pKa = 11.84TIYY364 pKa = 9.64EE365 pKa = 3.67NAVRR369 pKa = 11.84SLVDD373 pKa = 3.11RR374 pKa = 11.84PYY376 pKa = 11.01NIRR379 pKa = 11.84DD380 pKa = 3.49SYY382 pKa = 11.74LKK384 pKa = 10.07TFVKK388 pKa = 10.58FEE390 pKa = 4.24KK391 pKa = 10.63LDD393 pKa = 3.82FSKK396 pKa = 11.03KK397 pKa = 9.08PDD399 pKa = 3.82PAPRR403 pKa = 11.84VIQPRR408 pKa = 11.84HH409 pKa = 4.77PRR411 pKa = 11.84YY412 pKa = 9.36NVEE415 pKa = 3.88LGRR418 pKa = 11.84YY419 pKa = 7.19LKK421 pKa = 10.46PFEE424 pKa = 4.32HH425 pKa = 6.76FCYY428 pKa = 10.23KK429 pKa = 10.7ALDD432 pKa = 4.05KK433 pKa = 11.12LWGGPTVMKK442 pKa = 10.44GYY444 pKa = 8.15TVEE447 pKa = 4.02EE448 pKa = 3.8MGGIIKK454 pKa = 10.23DD455 pKa = 3.12SWLQFQKK462 pKa = 10.59PVAIGFDD469 pKa = 3.3MSRR472 pKa = 11.84FDD474 pKa = 3.24QHH476 pKa = 8.4VSVDD480 pKa = 3.42ALKK483 pKa = 10.67FEE485 pKa = 4.16HH486 pKa = 6.96SIYY489 pKa = 10.24KK490 pKa = 10.43ACFSKK495 pKa = 10.89DD496 pKa = 3.17GNLATLLGHH505 pKa = 6.42QISNRR510 pKa = 11.84GSAYY514 pKa = 10.57ANDD517 pKa = 4.32GYY519 pKa = 11.23LRR521 pKa = 11.84YY522 pKa = 9.38RR523 pKa = 11.84VEE525 pKa = 4.38GKK527 pKa = 10.57RR528 pKa = 11.84MSGDD532 pKa = 3.26VNTGLGNCLLACTITKK548 pKa = 10.2FLMEE552 pKa = 4.89EE553 pKa = 3.38IGVRR557 pKa = 11.84SRR559 pKa = 11.84LVNNGDD565 pKa = 3.76DD566 pKa = 3.67CVLICEE572 pKa = 4.96AGDD575 pKa = 3.59CRR577 pKa = 11.84AVEE580 pKa = 4.35GSLTVGWRR588 pKa = 11.84RR589 pKa = 11.84FGFTCIAEE597 pKa = 4.24KK598 pKa = 10.15PVYY601 pKa = 9.24EE602 pKa = 4.02LEE604 pKa = 4.78KK605 pKa = 10.64IEE607 pKa = 4.29FCQMSPIQISDD618 pKa = 3.43SRR620 pKa = 11.84VKK622 pKa = 10.53LVRR625 pKa = 11.84KK626 pKa = 7.02PQKK629 pKa = 10.54SISKK633 pKa = 8.91DD634 pKa = 3.23AHH636 pKa = 5.36STTPLTTIQLAQEE649 pKa = 3.78WTRR652 pKa = 11.84AIGEE656 pKa = 4.5GGLSLTSGIPVVQEE670 pKa = 4.63FYY672 pKa = 11.01QCLIRR677 pKa = 11.84NGKK680 pKa = 9.1KK681 pKa = 8.84ATKK684 pKa = 9.04EE685 pKa = 4.05SKK687 pKa = 10.74KK688 pKa = 9.02MAFYY692 pKa = 11.13GDD694 pKa = 5.06YY695 pKa = 8.73YY696 pKa = 9.57WKK698 pKa = 9.91WVNQHH703 pKa = 5.2SGKK706 pKa = 10.34YY707 pKa = 9.5EE708 pKa = 3.83PVTEE712 pKa = 4.17EE713 pKa = 3.93ARR715 pKa = 11.84HH716 pKa = 5.4SFHH719 pKa = 7.01LAFGVSPDD727 pKa = 3.49QQLALEE733 pKa = 5.16DD734 pKa = 3.38IYY736 pKa = 11.6SRR738 pKa = 11.84KK739 pKa = 9.61SLLWEE744 pKa = 3.93SSPFTFEE751 pKa = 3.31VGAIEE756 pKa = 4.55WIFNQKK762 pKa = 9.56IPII765 pKa = 3.98

Molecular weight: 87.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1621

63

765

270.2

30.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.588 ± 0.984

2.468 ± 0.322

4.257 ± 0.286

6.416 ± 1.019

4.257 ± 0.627

6.971 ± 0.802

2.097 ± 0.2

4.812 ± 0.422

7.65 ± 0.868

8.945 ± 0.601

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.604 ± 0.197

3.825 ± 0.291

4.257 ± 0.51

2.714 ± 0.291

6.477 ± 0.915

8.143 ± 2.13

5.12 ± 0.655

7.341 ± 0.588

1.727 ± 0.346

3.27 ± 0.492
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski