Tabrizicola sp. TH137

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tabrizicola; unclassified Tabrizicola

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4404 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N4YCN0|A0A2N4YCN0_9RHOB Magnesium/cobalt efflux protein OS=Tabrizicola sp. TH137 OX=2067452 GN=C0V75_19450 PE=3 SV=1
MM1 pKa = 6.89THH3 pKa = 7.49LSRR6 pKa = 11.84MASATLLAAMLASPALAQSADD27 pKa = 3.08ISTITCADD35 pKa = 4.61LATMDD40 pKa = 3.55QDD42 pKa = 5.42GITTLLFWIDD52 pKa = 3.69GYY54 pKa = 10.92MGGQAQDD61 pKa = 3.37PTFDD65 pKa = 5.18LDD67 pKa = 3.76RR68 pKa = 11.84LSANIDD74 pKa = 3.28GAIALCQQNPGSSVMDD90 pKa = 4.16ALYY93 pKa = 9.35TAEE96 pKa = 4.3NGG98 pKa = 3.58

Molecular weight: 10.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N4YEY6|A0A2N4YEY6_9RHOB EamA family transporter OS=Tabrizicola sp. TH137 OX=2067452 GN=C0V75_12940 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.23GGRR28 pKa = 11.84LVLSARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.97GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4404

0

4404

1389744

38

2958

315.6

34.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.699 ± 0.063

0.843 ± 0.01

5.676 ± 0.037

5.693 ± 0.033

3.576 ± 0.024

9.072 ± 0.046

2.031 ± 0.019

4.846 ± 0.032

2.66 ± 0.029

10.517 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.681 ± 0.02

2.239 ± 0.024

5.49 ± 0.034

2.927 ± 0.017

7.321 ± 0.047

4.643 ± 0.029

5.374 ± 0.03

7.281 ± 0.034

1.477 ± 0.018

1.956 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski