Changjiang tombus-like virus 11

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KFY8|A0A1L3KFY8_9VIRU Uncharacterized protein OS=Changjiang tombus-like virus 11 OX=1922804 PE=4 SV=1
MM1 pKa = 7.62FKK3 pKa = 10.38RR4 pKa = 11.84AQTIRR9 pKa = 11.84QYY11 pKa = 10.29WSEE14 pKa = 3.85FKK16 pKa = 10.99KK17 pKa = 10.62PVFVGLDD24 pKa = 3.14ASRR27 pKa = 11.84FDD29 pKa = 3.3QHH31 pKa = 6.38VSRR34 pKa = 11.84EE35 pKa = 4.14ALEE38 pKa = 4.47FEE40 pKa = 4.5HH41 pKa = 7.13GLYY44 pKa = 10.08TEE46 pKa = 4.38VFRR49 pKa = 11.84DD50 pKa = 3.45PFLAYY55 pKa = 10.28LLNMQIDD62 pKa = 3.95QVGYY66 pKa = 11.17ANMADD71 pKa = 3.52GSVKK75 pKa = 10.76YY76 pKa = 10.4NVEE79 pKa = 3.86GCRR82 pKa = 11.84ASGDD86 pKa = 3.61MNTALGNVFLMCVITYY102 pKa = 10.09NYY104 pKa = 10.43LHH106 pKa = 7.23ALPCKK111 pKa = 9.37WRR113 pKa = 11.84FINDD117 pKa = 3.34GDD119 pKa = 3.88DD120 pKa = 3.34CGIFIEE126 pKa = 4.66HH127 pKa = 7.31ADD129 pKa = 3.43MHH131 pKa = 6.98LLDD134 pKa = 5.19EE135 pKa = 5.15LPSHH139 pKa = 6.42HH140 pKa = 6.88LLYY143 pKa = 10.58GFEE146 pKa = 4.57MEE148 pKa = 5.09VEE150 pKa = 4.09DD151 pKa = 3.85PVYY154 pKa = 10.26IIEE157 pKa = 4.37RR158 pKa = 11.84VEE160 pKa = 4.34FCQSRR165 pKa = 11.84PVQLNEE171 pKa = 4.21EE172 pKa = 4.04EE173 pKa = 4.0WMMVRR178 pKa = 11.84NIHH181 pKa = 6.72KK182 pKa = 10.15AIKK185 pKa = 9.84HH186 pKa = 5.56DD187 pKa = 4.54WICITSRR194 pKa = 11.84DD195 pKa = 3.49WATTEE200 pKa = 3.95EE201 pKa = 4.25NLVATSACGLALFGDD216 pKa = 4.46VPVLGPMYY224 pKa = 9.98QAMSRR229 pKa = 11.84FPHH232 pKa = 6.04RR233 pKa = 11.84QRR235 pKa = 11.84VVDD238 pKa = 4.75KK239 pKa = 11.07LLEE242 pKa = 4.36TKK244 pKa = 10.37EE245 pKa = 4.2GWRR248 pKa = 11.84SLLTGHH254 pKa = 7.4RR255 pKa = 11.84FNPVDD260 pKa = 3.48STIARR265 pKa = 11.84VSIYY269 pKa = 10.23KK270 pKa = 10.44AFGMLPDD277 pKa = 3.74EE278 pKa = 4.24QVEE281 pKa = 4.14LEE283 pKa = 4.16RR284 pKa = 11.84EE285 pKa = 4.05FRR287 pKa = 11.84AFDD290 pKa = 3.57PQNIKK295 pKa = 10.94DD296 pKa = 3.67KK297 pKa = 10.59TSLYY301 pKa = 8.77SQPSVRR307 pKa = 11.84VQYY310 pKa = 10.75IIDD313 pKa = 3.56TT314 pKa = 4.1

Molecular weight: 36.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KFY8|A0A1L3KFY8_9VIRU Uncharacterized protein OS=Changjiang tombus-like virus 11 OX=1922804 PE=4 SV=1
MM1 pKa = 7.44ALEE4 pKa = 4.93IILLLVIAFEE14 pKa = 4.54IIVRR18 pKa = 11.84TKK20 pKa = 9.67VWDD23 pKa = 3.63AAGSLVTAALEE34 pKa = 4.52GCGRR38 pKa = 11.84AWTWMVPCFRR48 pKa = 11.84AILPILRR55 pKa = 11.84APILEE60 pKa = 4.33VVSATSCWVSVLYY73 pKa = 10.61HH74 pKa = 6.27SLLMGHH80 pKa = 6.47VRR82 pKa = 11.84RR83 pKa = 11.84QRR85 pKa = 11.84RR86 pKa = 11.84RR87 pKa = 11.84RR88 pKa = 11.84IVLEE92 pKa = 3.76SSKK95 pKa = 9.69RR96 pKa = 11.84TQRR99 pKa = 11.84VLSVLDD105 pKa = 3.42MDD107 pKa = 5.67EE108 pKa = 5.21IGDD111 pKa = 4.35DD112 pKa = 3.63EE113 pKa = 4.54MEE115 pKa = 4.09LVGRR119 pKa = 11.84KK120 pKa = 9.63LYY122 pKa = 10.09VRR124 pKa = 11.84CAVLISRR131 pKa = 11.84RR132 pKa = 11.84ARR134 pKa = 11.84MGLKK138 pKa = 9.96YY139 pKa = 10.25PSYY142 pKa = 10.79SPANEE147 pKa = 4.15RR148 pKa = 11.84IAADD152 pKa = 4.37WILKK156 pKa = 9.25HH157 pKa = 6.62LPDD160 pKa = 5.01DD161 pKa = 3.5MTVGVRR167 pKa = 11.84HH168 pKa = 5.96KK169 pKa = 10.69VLPLAVKK176 pKa = 8.37LTFVRR181 pKa = 11.84SHH183 pKa = 7.25YY184 pKa = 9.61EE185 pKa = 3.71DD186 pKa = 3.56KK187 pKa = 11.15AALHH191 pKa = 5.33FQGLKK196 pKa = 10.16EE197 pKa = 3.9YY198 pKa = 11.3VDD200 pKa = 4.87FSRR203 pKa = 11.84HH204 pKa = 3.98

Molecular weight: 23.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

841

204

323

280.3

31.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.037 ± 1.396

1.784 ± 0.229

4.875 ± 0.837

4.875 ± 1.335

4.162 ± 0.759

6.421 ± 1.018

2.973 ± 0.322

4.4 ± 0.898

3.805 ± 0.198

9.512 ± 0.992

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.092 ± 0.384

4.043 ± 1.178

4.637 ± 0.508

3.448 ± 0.616

6.659 ± 1.135

5.945 ± 0.372

6.302 ± 1.554

8.442 ± 0.728

1.902 ± 0.178

3.686 ± 0.264
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski