Trachymyrmex septentrionalis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae;

Average proteome isoelectric point is 7.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15167 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A195F273|A0A195F273_9HYME Uncharacterized protein OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_10968 PE=4 SV=1
MM1 pKa = 7.14VVLSSLLPPQEE12 pKa = 4.66GIRR15 pKa = 11.84HH16 pKa = 5.66EE17 pKa = 4.43EE18 pKa = 4.06PNTTVYY24 pKa = 10.78INDD27 pKa = 3.7RR28 pKa = 11.84EE29 pKa = 4.35VGKK32 pKa = 8.84GTFYY36 pKa = 10.18VTEE39 pKa = 4.5SVLSWVDD46 pKa = 2.99NDD48 pKa = 3.93TQQGFSLEE56 pKa = 4.16YY57 pKa = 10.02PHH59 pKa = 7.27ISLHH63 pKa = 6.32AISRR67 pKa = 11.84DD68 pKa = 3.7EE69 pKa = 3.97QVHH72 pKa = 5.94PRR74 pKa = 11.84QCLYY78 pKa = 10.85IMVDD82 pKa = 3.51AKK84 pKa = 11.28VDD86 pKa = 4.08LPDD89 pKa = 3.71MPLPLASEE97 pKa = 4.22NGSEE101 pKa = 4.77NEE103 pKa = 5.14DD104 pKa = 4.18DD105 pKa = 4.55NADD108 pKa = 3.68PPITEE113 pKa = 4.18MQFAPDD119 pKa = 3.43NTNNLDD125 pKa = 4.13LMFQAMSACQALHH138 pKa = 7.46PDD140 pKa = 3.96PQDD143 pKa = 3.33SFSDD147 pKa = 3.31EE148 pKa = 5.17DD149 pKa = 3.49IYY151 pKa = 11.58EE152 pKa = 4.45DD153 pKa = 4.89AEE155 pKa = 3.9EE156 pKa = 4.97DD157 pKa = 3.89YY158 pKa = 11.19EE159 pKa = 4.62GEE161 pKa = 3.98YY162 pKa = 10.9DD163 pKa = 3.93EE164 pKa = 5.7EE165 pKa = 4.62VGAGDD170 pKa = 4.78APCILPTEE178 pKa = 4.36QMGTTHH184 pKa = 7.33TGTEE188 pKa = 4.09AEE190 pKa = 3.99EE191 pKa = 4.31AMDD194 pKa = 3.59IEE196 pKa = 4.89AGQFEE201 pKa = 4.86DD202 pKa = 5.63AEE204 pKa = 4.32EE205 pKa = 4.4DD206 pKa = 3.54PP207 pKa = 5.23

Molecular weight: 23.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A151JUX0|A0A151JUX0_9HYME Galactokinase OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_08404 PE=3 SV=1
RR1 pKa = 7.55RR2 pKa = 11.84PRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84PRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84PRR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84PRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84PRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84PRR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84PRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84PRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84PRR40 pKa = 11.84RR41 pKa = 11.84RR42 pKa = 11.84PRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84PRR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84PRR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84PRR56 pKa = 11.84RR57 pKa = 11.84RR58 pKa = 11.84PRR60 pKa = 11.84RR61 pKa = 11.84RR62 pKa = 11.84PRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84PRR68 pKa = 11.84RR69 pKa = 11.84RR70 pKa = 11.84RR71 pKa = 11.84RR72 pKa = 11.84RR73 pKa = 11.84RR74 pKa = 11.84RR75 pKa = 11.84ISRR78 pKa = 11.84IQGEE82 pKa = 4.49LVSRR86 pKa = 11.84YY87 pKa = 7.54LTAAAAIKK95 pKa = 10.32RR96 pKa = 11.84GLRR99 pKa = 11.84SRR101 pKa = 11.84GGLSMAGLLPTTCHH115 pKa = 6.13PGSRR119 pKa = 11.84GGCAGG124 pKa = 3.43

Molecular weight: 15.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15167

0

15167

6907062

18

16615

455.4

51.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.018 ± 0.02

2.052 ± 0.033

5.342 ± 0.016

6.624 ± 0.034

3.664 ± 0.016

5.262 ± 0.027

2.526 ± 0.011

6.16 ± 0.021

6.38 ± 0.032

8.994 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.288 ± 0.01

5.163 ± 0.021

4.891 ± 0.027

4.13 ± 0.022

5.969 ± 0.023

8.183 ± 0.026

6.041 ± 0.02

5.918 ± 0.017

1.079 ± 0.008

3.212 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski