Trichomonas vaginalis

Taxonomy: cellular organisms; Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 50190 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A2HWU2|A2HWU2_TRIVA DNA-directed DNA polymerase (Fragment) OS=Trichomonas vaginalis OX=5722 GN=TVAG_583250 PE=4 SV=1
MM1 pKa = 6.55YY2 pKa = 9.98TNFLRR7 pKa = 11.84FLSSSRR13 pKa = 11.84CFLTPSCIHH22 pKa = 6.39HH23 pKa = 6.66AASSLHH29 pKa = 5.76QGASSLDD36 pKa = 3.5QDD38 pKa = 4.49ASSLLQSTSSLDD50 pKa = 3.39QDD52 pKa = 3.96ASSLLQSTSSLHH64 pKa = 5.85QDD66 pKa = 2.9ASSLLQSTSSLHH78 pKa = 5.94QDD80 pKa = 3.72ASSLDD85 pKa = 3.54QGASSLLQSTSSLDD99 pKa = 3.39QDD101 pKa = 3.96ASSLLQSTSSLQQSDD116 pKa = 3.5SSLLQNTSSLDD127 pKa = 3.39QGASSLLQSTSSLDD141 pKa = 3.3QGASSLHH148 pKa = 5.76QDD150 pKa = 3.28ASSLQQSTSSLHH162 pKa = 5.84QDD164 pKa = 3.65ASSLDD169 pKa = 3.57QDD171 pKa = 4.13ASSLLQSTSSLDD183 pKa = 3.39QDD185 pKa = 3.96ASSLLQSTSSLLQSTSSLHH204 pKa = 5.94QDD206 pKa = 3.72ASSLDD211 pKa = 3.48QGASSLHH218 pKa = 5.73QDD220 pKa = 3.38ASSLLQSTSSLHH232 pKa = 5.94QDD234 pKa = 3.65ASSLDD239 pKa = 3.57QDD241 pKa = 4.13ASSLLQSTSSLHH253 pKa = 5.94QDD255 pKa = 3.72ASSLDD260 pKa = 3.54QGASSLLQSTSSLHH274 pKa = 5.85QDD276 pKa = 2.9ASSLLQSTSSLHH288 pKa = 5.94QDD290 pKa = 3.65ASSLDD295 pKa = 3.57QDD297 pKa = 4.59ASSLLQQ303 pKa = 3.54

Molecular weight: 31.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A2HED7|A2HED7_TRIVA Uncharacterized protein (Fragment) OS=Trichomonas vaginalis OX=5722 GN=TVAG_574800 PE=4 SV=1
TT1 pKa = 5.42TTISSSSGLFLNRR14 pKa = 11.84RR15 pKa = 11.84QQQSLPAQALPQQRR29 pKa = 11.84QQQSLPAQALPQQRR43 pKa = 11.84QQQSLPAQALPQQRR57 pKa = 11.84QQQSLPAQTLPQQRR71 pKa = 11.84QQQSLPAQALPQQRR85 pKa = 11.84QQQSLPAQTLPQQRR99 pKa = 11.84QQQSLPAQALPQQRR113 pKa = 11.84QQQSLPAQALPQQRR127 pKa = 11.84QQQSLPAQALPQQRR141 pKa = 11.84QQQSLPAQALPQQRR155 pKa = 11.84QQQSLPAQTLPQQRR169 pKa = 11.84QQQSLPTQALPKK181 pKa = 9.11QQPHH185 pKa = 5.28II186 pKa = 4.33

Molecular weight: 20.98 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

50190

0

50190

17055200

30

9597

339.8

38.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.145 ± 0.013

1.594 ± 0.006

5.819 ± 0.009

7.384 ± 0.021

5.149 ± 0.013

3.958 ± 0.014

1.949 ± 0.006

7.943 ± 0.014

8.296 ± 0.018

8.654 ± 0.014

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.302 ± 0.005

6.423 ± 0.011

4.18 ± 0.013

4.128 ± 0.013

3.727 ± 0.008

7.555 ± 0.016

5.566 ± 0.01

5.189 ± 0.009

0.792 ± 0.004

4.07 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski