Cyphomyrmex costatus

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae;

Average proteome isoelectric point is 7.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 15716 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A151IMZ8|A0A151IMZ8_9HYME Uncharacterized protein OS=Cyphomyrmex costatus OX=456900 GN=ALC62_02640 PE=4 SV=1
MM1 pKa = 7.49NIAPTSDD8 pKa = 3.2EE9 pKa = 4.63EE10 pKa = 4.57NPFDD14 pKa = 5.7AFLTLHH20 pKa = 6.79NDD22 pKa = 3.32NGHH25 pKa = 7.21DD26 pKa = 4.17DD27 pKa = 4.46DD28 pKa = 6.03LFAIINPPIIDD39 pKa = 5.14GIQIINHH46 pKa = 5.2VLIVNYY52 pKa = 8.07TT53 pKa = 3.23

Molecular weight: 5.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A151IJL4|A0A151IJL4_9HYME Uncharacterized protein OS=Cyphomyrmex costatus OX=456900 GN=ALC62_06183 PE=4 SV=1
MM1 pKa = 7.45ATTTTATTTHH11 pKa = 6.72CFLQTSKK18 pKa = 11.08HH19 pKa = 4.97PFPRR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84TRR27 pKa = 11.84RR28 pKa = 11.84HH29 pKa = 5.05LLPRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84TPRR38 pKa = 11.84HH39 pKa = 4.71LFRR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84TPRR48 pKa = 11.84HH49 pKa = 5.27PYY51 pKa = 8.45PRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84TPRR58 pKa = 11.84HH59 pKa = 4.68SLPRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84TPRR68 pKa = 11.84HH69 pKa = 4.68SLPRR73 pKa = 11.84RR74 pKa = 11.84RR75 pKa = 11.84TRR77 pKa = 11.84RR78 pKa = 11.84HH79 pKa = 5.81PIPRR83 pKa = 11.84RR84 pKa = 11.84RR85 pKa = 11.84TPRR88 pKa = 11.84HH89 pKa = 4.47LVPRR93 pKa = 11.84RR94 pKa = 11.84RR95 pKa = 11.84TPRR98 pKa = 11.84HH99 pKa = 5.43SVPQRR104 pKa = 11.84RR105 pKa = 11.84TPRR108 pKa = 11.84HH109 pKa = 4.76SLPRR113 pKa = 11.84RR114 pKa = 11.84RR115 pKa = 11.84TPRR118 pKa = 11.84HH119 pKa = 4.89LVPRR123 pKa = 11.84MRR125 pKa = 11.84TPRR128 pKa = 11.84HH129 pKa = 5.27LFPRR133 pKa = 11.84QRR135 pKa = 11.84TPRR138 pKa = 11.84HH139 pKa = 5.79SLPQNRR145 pKa = 11.84TRR147 pKa = 11.84RR148 pKa = 11.84HH149 pKa = 4.95LLPRR153 pKa = 11.84RR154 pKa = 11.84RR155 pKa = 11.84TYY157 pKa = 10.37II158 pKa = 3.42

Molecular weight: 19.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

15716

0

15716

7198715

18

14081

458.1

51.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.92 ± 0.019

2.084 ± 0.025

5.359 ± 0.018

6.572 ± 0.027

3.707 ± 0.018

5.168 ± 0.024

2.563 ± 0.01

6.249 ± 0.025

6.492 ± 0.028

9.038 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.268 ± 0.01

5.295 ± 0.02

4.78 ± 0.027

4.092 ± 0.024

5.907 ± 0.023

8.083 ± 0.026

6.027 ± 0.017

5.925 ± 0.014

1.08 ± 0.007

3.28 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski