Artogeia rapae granulovirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Baculoviridae; Betabaculovirus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 120 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D2J4R9|D2J4R9_9BBAC DNA ligase OS=Artogeia rapae granulovirus OX=362830 PE=4 SV=1
MM1 pKa = 7.09GQYY4 pKa = 10.84NPIVYY9 pKa = 10.38SKK11 pKa = 10.8FFTLIYY17 pKa = 8.82NTNEE21 pKa = 3.52NAQSFDD27 pKa = 3.21AVKK30 pKa = 10.85NIILNSDD37 pKa = 3.86LLKK40 pKa = 10.91NDD42 pKa = 3.85TDD44 pKa = 5.07DD45 pKa = 5.87FMLKK49 pKa = 10.26PPVLLTPIHH58 pKa = 5.65EE59 pKa = 4.66LCHH62 pKa = 6.46EE63 pKa = 4.39EE64 pKa = 4.89LLMLIWNAKK73 pKa = 6.42YY74 pKa = 10.32ARR76 pKa = 11.84EE77 pKa = 3.85LFLPQRR83 pKa = 11.84WAITYY88 pKa = 7.77YY89 pKa = 11.12KK90 pKa = 10.49NLEE93 pKa = 3.94TNEE96 pKa = 4.42CYY98 pKa = 10.27KK99 pKa = 10.69CSSDD103 pKa = 3.57AQFFCVDD110 pKa = 4.72KK111 pKa = 11.11IITNCVNNCVKK122 pKa = 10.46FNSFSSEE129 pKa = 4.15DD130 pKa = 3.65TDD132 pKa = 4.16DD133 pKa = 3.98LQTIVFDD140 pKa = 3.68TDD142 pKa = 3.62NYY144 pKa = 11.08CVICRR149 pKa = 11.84RR150 pKa = 11.84ALFNIINVEE159 pKa = 4.01NNGMFVCLDD168 pKa = 3.69EE169 pKa = 5.07SCFEE173 pKa = 4.17

Molecular weight: 20.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D2J4N9|D2J4N9_9BBAC LEF-5 OS=Artogeia rapae granulovirus OX=362830 PE=4 SV=1
MM1 pKa = 7.41VYY3 pKa = 10.06RR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84PGRR9 pKa = 11.84PRR11 pKa = 11.84SRR13 pKa = 11.84SRR15 pKa = 11.84SRR17 pKa = 11.84SRR19 pKa = 11.84SRR21 pKa = 11.84SPSYY25 pKa = 10.2RR26 pKa = 11.84RR27 pKa = 11.84TRR29 pKa = 11.84TRR31 pKa = 11.84SRR33 pKa = 11.84SRR35 pKa = 11.84SRR37 pKa = 11.84SRR39 pKa = 11.84SRR41 pKa = 11.84SPYY44 pKa = 8.74RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84SRR49 pKa = 11.84IQHH52 pKa = 6.84HH53 pKa = 6.31INQYY57 pKa = 8.01VV58 pKa = 2.75

Molecular weight: 7.33 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

120

0

120

33172

50

1133

276.4

32.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.753 ± 0.134

2.469 ± 0.14

5.719 ± 0.16

6.189 ± 0.269

4.974 ± 0.144

3.569 ± 0.181

1.932 ± 0.094

7.684 ± 0.147

8.35 ± 0.324

9.249 ± 0.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.382 ± 0.11

9.237 ± 0.223

3.096 ± 0.165

3.5 ± 0.137

3.726 ± 0.14

5.758 ± 0.173

5.866 ± 0.169

6.56 ± 0.18

0.913 ± 0.071

5.074 ± 0.164
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski