Desertiactinospora gelatinilytica

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Streptosporangiaceae; Desertiactinospora

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7511 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2W2IC39|A0A2W2IC39_9ACTN UPF0060 membrane protein C1I98_02975 OS=Desertiactinospora gelatinilytica OX=2666298 GN=C1I98_02975 PE=3 SV=1
MM1 pKa = 7.51FIADD5 pKa = 3.46EE6 pKa = 4.25VARR9 pKa = 11.84EE10 pKa = 3.9FAEE13 pKa = 4.32QFNGYY18 pKa = 9.21CADD21 pKa = 4.41EE22 pKa = 4.04IAARR26 pKa = 11.84LACSEE31 pKa = 3.83VDD33 pKa = 3.75ALAALLTALGDD44 pKa = 3.88EE45 pKa = 4.59EE46 pKa = 5.87LAATWIEE53 pKa = 3.98YY54 pKa = 9.48HH55 pKa = 7.28AEE57 pKa = 4.08GDD59 pKa = 4.97DD60 pKa = 3.77EE61 pKa = 6.67DD62 pKa = 4.33EE63 pKa = 4.12DD64 pKa = 4.28HH65 pKa = 6.78YY66 pKa = 11.43RR67 pKa = 11.84PPSS70 pKa = 3.29

Molecular weight: 7.75 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2W2HCF6|A0A2W2HCF6_9ACTN DNA-binding response regulator OS=Desertiactinospora gelatinilytica OX=2666298 GN=C1I98_17935 PE=4 SV=1
MM1 pKa = 7.63PGRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84ARR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84HH11 pKa = 4.94RR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84PAWSGTGRR22 pKa = 11.84LAGRR26 pKa = 11.84PARR29 pKa = 11.84PYY31 pKa = 10.57GRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84CPRR38 pKa = 11.84SARR41 pKa = 11.84AASRR45 pKa = 11.84GRR47 pKa = 11.84RR48 pKa = 11.84GAARR52 pKa = 11.84RR53 pKa = 11.84ARR55 pKa = 11.84SRR57 pKa = 11.84RR58 pKa = 11.84WWARR62 pKa = 11.84AAPASVRR69 pKa = 11.84PNRR72 pKa = 11.84PNRR75 pKa = 11.84SAGRR79 pKa = 11.84SGRR82 pKa = 11.84SGRR85 pKa = 11.84SGRR88 pKa = 11.84SGRR91 pKa = 11.84SGRR94 pKa = 11.84SGRR97 pKa = 3.73

Molecular weight: 10.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7511

0

7511

2234133

27

4293

297.4

31.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.684 ± 0.039

0.823 ± 0.007

5.759 ± 0.021

5.616 ± 0.025

2.758 ± 0.015

9.529 ± 0.025

2.276 ± 0.015

3.723 ± 0.019

1.935 ± 0.02

10.446 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.9 ± 0.012

1.669 ± 0.016

6.184 ± 0.025

2.528 ± 0.016

8.637 ± 0.033

4.729 ± 0.017

5.689 ± 0.023

8.501 ± 0.026

1.526 ± 0.012

2.086 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski