Turnip yellows virus (isolate FL-1) (TuYV) (BWYV-FL1)

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus; Beet western yellows virus

Average proteome isoelectric point is 7.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P09508|CAPSD_TYYVF Major capsid protein OS=Turnip yellows virus (isolate FL-1) OX=12043 GN=ORF3 PE=1 SV=1
MM1 pKa = 7.15YY2 pKa = 10.08SKK4 pKa = 11.39LMFFFALCSISFLFTSEE21 pKa = 4.24AASTMLLEE29 pKa = 4.85SSYY32 pKa = 11.57LPLNQSYY39 pKa = 11.08APGFLYY45 pKa = 10.33KK46 pKa = 9.5RR47 pKa = 11.84DD48 pKa = 3.92MLPPPLQAVLTYY60 pKa = 8.46TCPEE64 pKa = 3.96PRR66 pKa = 11.84PLAEE70 pKa = 3.85EE71 pKa = 4.55SYY73 pKa = 11.48NDD75 pKa = 3.77LLRR78 pKa = 11.84AISQKK83 pKa = 10.61SSSDD87 pKa = 3.37FQNAYY92 pKa = 10.72SLALSFSSDD101 pKa = 3.69FYY103 pKa = 11.08QHH105 pKa = 6.33GLKK108 pKa = 8.92TLKK111 pKa = 10.47DD112 pKa = 3.63VSFLAVEE119 pKa = 4.09KK120 pKa = 10.06FLWGLTRR127 pKa = 11.84LWSSLILASFSALWWLVSNFTTPVFCLALLYY158 pKa = 10.07TVTKK162 pKa = 10.67YY163 pKa = 8.99MVKK166 pKa = 9.22TVSFLFGGLPIWIISIAFSLLKK188 pKa = 10.52KK189 pKa = 10.36SFSALRR195 pKa = 11.84STPKK199 pKa = 10.25CLYY202 pKa = 9.61EE203 pKa = 4.04KK204 pKa = 10.62AIDD207 pKa = 3.9GFKK210 pKa = 10.84SFTIPQSPPKK220 pKa = 10.29SCVIPITHH228 pKa = 7.37ASGNHH233 pKa = 6.04AGYY236 pKa = 10.69ASCIKK241 pKa = 10.48LYY243 pKa = 10.7NGEE246 pKa = 4.21NALMTATHH254 pKa = 6.27VLRR257 pKa = 11.84DD258 pKa = 3.96CPNAVAVSAKK268 pKa = 9.91GLKK271 pKa = 8.58TRR273 pKa = 11.84IPLAEE278 pKa = 4.44FKK280 pKa = 10.39TIAKK284 pKa = 9.54SDD286 pKa = 3.71KK287 pKa = 11.22GDD289 pKa = 3.4VTLLRR294 pKa = 11.84GPPNWEE300 pKa = 3.66GLLGCKK306 pKa = 9.26AANVITAANLAKK318 pKa = 10.05CKK320 pKa = 10.56ASIYY324 pKa = 10.91SFDD327 pKa = 3.78RR328 pKa = 11.84DD329 pKa = 3.43GWVSSYY335 pKa = 11.8AEE337 pKa = 3.95IVGSEE342 pKa = 4.18GTDD345 pKa = 3.27VMVLSHH351 pKa = 6.44TEE353 pKa = 4.16GGHH356 pKa = 6.01SGSPYY361 pKa = 10.38FNGKK365 pKa = 7.92TILGVHH371 pKa = 6.43SGASATGNYY380 pKa = 10.3NLMAPIPSLPGLTSPTYY397 pKa = 10.69VFEE400 pKa = 4.23TTAPQGRR407 pKa = 11.84VFAQEE412 pKa = 4.55DD413 pKa = 3.38IAEE416 pKa = 4.23IEE418 pKa = 4.07GLYY421 pKa = 9.26AQVMKK426 pKa = 10.57RR427 pKa = 11.84VQQAEE432 pKa = 4.09DD433 pKa = 4.06FKK435 pKa = 11.3PKK437 pKa = 8.96TGKK440 pKa = 10.14YY441 pKa = 8.0WGDD444 pKa = 3.46MEE446 pKa = 6.29DD447 pKa = 4.72DD448 pKa = 3.35EE449 pKa = 7.03DD450 pKa = 4.68IFFEE454 pKa = 4.58SKK456 pKa = 10.59EE457 pKa = 3.98DD458 pKa = 3.68LSGKK462 pKa = 9.49RR463 pKa = 11.84SARR466 pKa = 11.84HH467 pKa = 4.96RR468 pKa = 11.84PRR470 pKa = 11.84NKK472 pKa = 9.48RR473 pKa = 11.84RR474 pKa = 11.84RR475 pKa = 11.84QLHH478 pKa = 6.14PKK480 pKa = 9.65DD481 pKa = 3.33KK482 pKa = 9.52QRR484 pKa = 11.84RR485 pKa = 11.84WEE487 pKa = 4.08RR488 pKa = 11.84DD489 pKa = 3.14DD490 pKa = 4.91GEE492 pKa = 4.52NNLISSGKK500 pKa = 9.96DD501 pKa = 2.66KK502 pKa = 11.15SRR504 pKa = 11.84EE505 pKa = 3.8HH506 pKa = 7.81RR507 pKa = 11.84EE508 pKa = 3.53EE509 pKa = 3.92SDD511 pKa = 3.34RR512 pKa = 11.84GDD514 pKa = 3.64LRR516 pKa = 11.84EE517 pKa = 3.92SDD519 pKa = 4.39EE520 pKa = 4.21NSEE523 pKa = 4.19IPPQKK528 pKa = 10.31SPKK531 pKa = 7.56EE532 pKa = 3.83TAGEE536 pKa = 3.94FEE538 pKa = 5.29RR539 pKa = 11.84YY540 pKa = 9.03FSSLYY545 pKa = 9.11NWEE548 pKa = 4.45VPTSPRR554 pKa = 11.84EE555 pKa = 4.01VPGFRR560 pKa = 11.84HH561 pKa = 6.45CGKK564 pKa = 10.14LPQYY568 pKa = 8.04YY569 pKa = 9.74HH570 pKa = 7.28PKK572 pKa = 9.78QKK574 pKa = 10.73EE575 pKa = 3.74EE576 pKa = 4.2SSWGKK581 pKa = 7.58TLVGNHH587 pKa = 6.7PALGEE592 pKa = 4.15KK593 pKa = 9.76TSGFGWPKK601 pKa = 10.31FGPEE605 pKa = 4.18AEE607 pKa = 4.33LKK609 pKa = 10.49SLRR612 pKa = 11.84LQASRR617 pKa = 11.84WLEE620 pKa = 3.67RR621 pKa = 11.84AQSAEE626 pKa = 3.9IPSDD630 pKa = 3.55AEE632 pKa = 3.89RR633 pKa = 11.84EE634 pKa = 3.98RR635 pKa = 11.84VIQKK639 pKa = 8.55TADD642 pKa = 3.38VYY644 pKa = 11.1HH645 pKa = 7.18PCQTNGPAATRR656 pKa = 11.84GGTLTWNNFMIDD668 pKa = 3.4FKK670 pKa = 11.22QAVFSLEE677 pKa = 3.41FDD679 pKa = 3.58AGIEE683 pKa = 4.07LPYY686 pKa = 9.96IAYY689 pKa = 8.47GKK691 pKa = 6.48PTHH694 pKa = 6.61RR695 pKa = 11.84GWVEE699 pKa = 3.84DD700 pKa = 3.73QKK702 pKa = 11.58LLPILAQLTFFRR714 pKa = 11.84LQKK717 pKa = 8.96MLEE720 pKa = 4.17VNFEE724 pKa = 4.3DD725 pKa = 3.8MGPEE729 pKa = 3.65EE730 pKa = 4.37LVRR733 pKa = 11.84NGLCDD738 pKa = 4.9PIRR741 pKa = 11.84LFVKK745 pKa = 10.72GEE747 pKa = 3.72PHH749 pKa = 6.07KK750 pKa = 10.35QAKK753 pKa = 9.74LDD755 pKa = 3.49EE756 pKa = 4.35GRR758 pKa = 11.84YY759 pKa = 8.74RR760 pKa = 11.84LIMSVSLVDD769 pKa = 3.45QLVARR774 pKa = 11.84VLFQNQNKK782 pKa = 9.66RR783 pKa = 11.84EE784 pKa = 3.93IALWRR789 pKa = 11.84AIPSKK794 pKa = 10.55PGFGLSTDD802 pKa = 3.63EE803 pKa = 4.0QVLDD807 pKa = 4.39FVEE810 pKa = 4.52SLARR814 pKa = 11.84QVGTTTTEE822 pKa = 4.3VVANWKK828 pKa = 10.48NYY830 pKa = 7.39LTPTDD835 pKa = 3.85CSGFDD840 pKa = 3.29WSVADD845 pKa = 4.66WMLHH849 pKa = 6.3DD850 pKa = 5.93DD851 pKa = 3.88MIVRR855 pKa = 11.84NRR857 pKa = 11.84LTIDD861 pKa = 3.98LNPATEE867 pKa = 4.17RR868 pKa = 11.84LRR870 pKa = 11.84SCWLRR875 pKa = 11.84CISNSVLCLSDD886 pKa = 3.4GTLLAQIHH894 pKa = 6.53PGVQKK899 pKa = 10.58SGSYY903 pKa = 8.25NTSSSNSRR911 pKa = 11.84IRR913 pKa = 11.84VMAAFHH919 pKa = 6.38TGAIWAMAMGDD930 pKa = 4.26DD931 pKa = 4.27ALEE934 pKa = 4.42SNPADD939 pKa = 3.08LAAYY943 pKa = 8.36KK944 pKa = 10.67KK945 pKa = 10.67LGFKK949 pKa = 10.75VEE951 pKa = 4.07VSGQLEE957 pKa = 4.4FCSHH961 pKa = 6.9IFRR964 pKa = 11.84APDD967 pKa = 2.96LALPVNEE974 pKa = 4.54NKK976 pKa = 9.67MIYY979 pKa = 9.98KK980 pKa = 10.45LIYY983 pKa = 9.77GYY985 pKa = 11.17NPGSGNAEE993 pKa = 3.82VVSNYY998 pKa = 9.89LAACFSVLNEE1008 pKa = 4.29LRR1010 pKa = 11.84HH1011 pKa = 6.26DD1012 pKa = 4.09PASVEE1017 pKa = 4.7LLYY1020 pKa = 11.01SWLVDD1025 pKa = 3.26PVLPQKK1031 pKa = 10.76IPGEE1035 pKa = 4.12

Molecular weight: 115.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P09511|MVP_TYYVF Movement protein OS=Turnip yellows virus (isolate FL-1) OX=12043 GN=ORF4 PE=3 SV=1
MM1 pKa = 6.49NTVVGRR7 pKa = 11.84RR8 pKa = 11.84IINGRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84PRR17 pKa = 11.84RR18 pKa = 11.84QTRR21 pKa = 11.84RR22 pKa = 11.84AQRR25 pKa = 11.84PQPVVVVQTSRR36 pKa = 11.84ATQRR40 pKa = 11.84RR41 pKa = 11.84PRR43 pKa = 11.84RR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84GNNRR51 pKa = 11.84TGRR54 pKa = 11.84TVPTRR59 pKa = 11.84GAGSSEE65 pKa = 3.84TFVFSKK71 pKa = 11.13DD72 pKa = 3.3NLAGSSSGAITFGPSLSDD90 pKa = 4.1CPAFSNGMLKK100 pKa = 10.2AYY102 pKa = 10.09HH103 pKa = 6.71EE104 pKa = 4.71YY105 pKa = 9.92KK106 pKa = 10.07ISMVILEE113 pKa = 4.63FVSEE117 pKa = 4.2ASSQNSGSIAYY128 pKa = 9.39EE129 pKa = 3.85LDD131 pKa = 3.29PHH133 pKa = 6.98CKK135 pKa = 10.11LNSLSSTINKK145 pKa = 9.78FGITKK150 pKa = 8.99PGKK153 pKa = 8.95RR154 pKa = 11.84AFTASYY160 pKa = 10.69INGTEE165 pKa = 3.71WHH167 pKa = 7.15DD168 pKa = 3.6VAEE171 pKa = 4.36DD172 pKa = 3.49QFRR175 pKa = 11.84ILYY178 pKa = 9.14KK179 pKa = 11.0GNGSSSIAGSFRR191 pKa = 11.84ITIKK195 pKa = 10.85CQFHH199 pKa = 6.04NPKK202 pKa = 10.51

Molecular weight: 22.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2983

45

1035

426.1

47.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.006 ± 0.584

1.475 ± 0.183

4.392 ± 0.448

5.867 ± 0.323

4.693 ± 0.792

6.839 ± 0.502

1.944 ± 0.362

4.861 ± 0.497

5.9 ± 0.497

8.683 ± 1.154

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.978 ± 0.131

4.123 ± 0.361

6.068 ± 0.406

3.553 ± 0.351

6.068 ± 0.905

10.359 ± 0.654

6.068 ± 0.507

5.33 ± 0.228

1.676 ± 0.207

3.118 ± 0.29
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski