Giant panda circovirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus

Average proteome isoelectric point is 8.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A220IGS1|A0A220IGS1_9CIRC Capsid protein OS=Giant panda circovirus 1 OX=2016456 PE=4 SV=1
MM1 pKa = 7.16SQPEE5 pKa = 4.17PLLSRR10 pKa = 11.84SEE12 pKa = 4.01ASEE15 pKa = 4.31DD16 pKa = 3.37GSRR19 pKa = 11.84SSKK22 pKa = 9.74SRR24 pKa = 11.84RR25 pKa = 11.84QGRR28 pKa = 11.84YY29 pKa = 7.69WILTISCDD37 pKa = 3.89SNPWTPTALLPGQSYY52 pKa = 9.2VVGQQEE58 pKa = 4.29VGVGGFKK65 pKa = 9.95HH66 pKa = 4.96WQVMVAYY73 pKa = 8.97SKK75 pKa = 10.95KK76 pKa = 9.81VGLRR80 pKa = 11.84CVQRR84 pKa = 11.84DD85 pKa = 3.84FGSCHH90 pKa = 7.2AEE92 pKa = 3.75LTYY95 pKa = 10.89SDD97 pKa = 4.26SARR100 pKa = 11.84EE101 pKa = 3.99YY102 pKa = 10.6CRR104 pKa = 11.84KK105 pKa = 9.86EE106 pKa = 3.75DD107 pKa = 3.58TRR109 pKa = 11.84VEE111 pKa = 4.14GTQFEE116 pKa = 4.92FGTLATRR123 pKa = 11.84RR124 pKa = 11.84NSEE127 pKa = 4.0TDD129 pKa = 2.44WDD131 pKa = 4.46VIRR134 pKa = 11.84DD135 pKa = 3.75AAQLSDD141 pKa = 3.81LSGVPSDD148 pKa = 3.99IYY150 pKa = 10.6VRR152 pKa = 11.84CYY154 pKa = 10.06NQLRR158 pKa = 11.84RR159 pKa = 11.84IGQDD163 pKa = 2.71HH164 pKa = 6.92LRR166 pKa = 11.84PVGMEE171 pKa = 4.04RR172 pKa = 11.84TCHH175 pKa = 5.14VFWGRR180 pKa = 11.84TGTGKK185 pKa = 9.99SRR187 pKa = 11.84RR188 pKa = 11.84AWEE191 pKa = 3.97EE192 pKa = 3.63AGLCAYY198 pKa = 9.5PKK200 pKa = 10.71DD201 pKa = 4.16PNTKK205 pKa = 9.51FWDD208 pKa = 4.49GYY210 pKa = 9.96RR211 pKa = 11.84NHH213 pKa = 5.95EE214 pKa = 4.2HH215 pKa = 6.16VVIDD219 pKa = 3.79EE220 pKa = 3.96FRR222 pKa = 11.84GIINISNLLRR232 pKa = 11.84WLDD235 pKa = 3.8RR236 pKa = 11.84YY237 pKa = 9.87PVIVEE242 pKa = 3.99VKK244 pKa = 8.23GSSVVFCARR253 pKa = 11.84TIWITSNVNPEE264 pKa = 3.54QWYY267 pKa = 9.59PDD269 pKa = 3.59ADD271 pKa = 3.92QEE273 pKa = 4.72TKK275 pKa = 10.77DD276 pKa = 3.36ALLRR280 pKa = 11.84RR281 pKa = 11.84LTVVYY286 pKa = 9.55FEE288 pKa = 4.61

Molecular weight: 33.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A220IGS1|A0A220IGS1_9CIRC Capsid protein OS=Giant panda circovirus 1 OX=2016456 PE=4 SV=1
MM1 pKa = 7.45VIGLMSLRR9 pKa = 11.84PRR11 pKa = 11.84YY12 pKa = 9.37RR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84SITPSDD21 pKa = 3.57VASFAWRR28 pKa = 11.84NRR30 pKa = 11.84RR31 pKa = 11.84TVHH34 pKa = 6.47NGILRR39 pKa = 11.84SGEE42 pKa = 3.85WVRR45 pKa = 11.84RR46 pKa = 11.84NAARR50 pKa = 11.84RR51 pKa = 11.84SSTSTVSTGGSRR63 pKa = 11.84RR64 pKa = 11.84SSLLSTGAASVKK76 pKa = 9.21RR77 pKa = 11.84TQLQGGATEE86 pKa = 3.79RR87 pKa = 11.84TARR90 pKa = 11.84VKK92 pKa = 10.55RR93 pKa = 11.84YY94 pKa = 9.18GSKK97 pKa = 10.14LKK99 pKa = 10.6KK100 pKa = 8.93IGRR103 pKa = 11.84RR104 pKa = 11.84RR105 pKa = 11.84VKK107 pKa = 10.24VSRR110 pKa = 11.84KK111 pKa = 8.98LRR113 pKa = 11.84AKK115 pKa = 10.15IIEE118 pKa = 4.14VTDD121 pKa = 3.71GNKK124 pKa = 9.3IQGYY128 pKa = 7.98YY129 pKa = 8.77QDD131 pKa = 3.95NRR133 pKa = 11.84IDD135 pKa = 3.72VLDD138 pKa = 4.58PGALGGRR145 pKa = 11.84QNVEE149 pKa = 3.44IFPNRR154 pKa = 11.84GGAASGYY161 pKa = 7.71MFNYY165 pKa = 10.11DD166 pKa = 3.44RR167 pKa = 11.84VLHH170 pKa = 5.7AASRR174 pKa = 11.84LWNTKK179 pKa = 9.89AAVQNPVYY187 pKa = 10.83SDD189 pKa = 3.77ALNFSPNDD197 pKa = 3.46TVINVEE203 pKa = 4.2KK204 pKa = 10.56QWWTFEE210 pKa = 3.86LRR212 pKa = 11.84NNSTRR217 pKa = 11.84TATLKK222 pKa = 9.24FCKK225 pKa = 9.5MRR227 pKa = 11.84MKK229 pKa = 10.5RR230 pKa = 11.84GCAQTLPYY238 pKa = 8.89DD239 pKa = 3.39TWVNGLAQMTTSGEE253 pKa = 4.27LVGGATINTMFTMPTLSTQFKK274 pKa = 8.26TAYY277 pKa = 8.13KK278 pKa = 10.36LEE280 pKa = 4.4VIKK283 pKa = 11.09VVLEE287 pKa = 4.11PGQSYY292 pKa = 8.14TFNIEE297 pKa = 3.94GPAMTYY303 pKa = 10.1HH304 pKa = 6.2GQDD307 pKa = 3.04FFDD310 pKa = 3.76NGTYY314 pKa = 10.23RR315 pKa = 11.84PVQKK319 pKa = 10.34QDD321 pKa = 2.93TLGFVIEE328 pKa = 4.35HH329 pKa = 6.27VDD331 pKa = 3.38MVGTHH336 pKa = 5.64ATSEE340 pKa = 4.36GAAGNAGFAPDD351 pKa = 3.49TTEE354 pKa = 4.41ANQAQEE360 pKa = 4.01RR361 pKa = 11.84VYY363 pKa = 10.33MRR365 pKa = 11.84STYY368 pKa = 9.97HH369 pKa = 6.49CRR371 pKa = 11.84LNMPEE376 pKa = 4.0KK377 pKa = 10.84VGGISTAAASIFQNGNRR394 pKa = 11.84VRR396 pKa = 11.84RR397 pKa = 11.84TCVDD401 pKa = 2.73EE402 pKa = 5.1FMPTTFATTMHH413 pKa = 6.62RR414 pKa = 11.84RR415 pKa = 11.84DD416 pKa = 3.58EE417 pKa = 4.33EE418 pKa = 4.44NPVVDD423 pKa = 4.14MNN425 pKa = 4.32

Molecular weight: 47.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

713

288

425

356.5

40.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.732 ± 1.102

1.683 ± 0.645

4.909 ± 0.79

5.189 ± 0.829

3.506 ± 0.225

7.854 ± 0.331

1.823 ± 0.153

3.927 ± 0.141

4.067 ± 0.35

5.891 ± 0.416

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.525 ± 0.873

4.909 ± 1.05

3.787 ± 0.224

4.208 ± 0.18

9.818 ± 0.056

7.293 ± 0.612

8.135 ± 1.314

7.854 ± 0.282

2.244 ± 0.723

3.647 ± 0.306
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski