Pedilanthus leaf curl virus [Pakistan:Multan:2004]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Pedilanthus leaf curl virus

Average proteome isoelectric point is 8.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B7ZER7|B7ZER7_9GEMI C4 protein OS=Pedilanthus leaf curl virus [Pakistan:Multan:2004] OX=587313 GN=C4 PE=3 SV=1
MM1 pKa = 7.91PFGTHH6 pKa = 6.6YY7 pKa = 10.78ILSTDD12 pKa = 3.02IQVINIQNPIGTHH25 pKa = 4.86LTKK28 pKa = 11.04SMAPPKK34 pKa = 10.14RR35 pKa = 11.84FQIYY39 pKa = 9.45ARR41 pKa = 11.84NYY43 pKa = 7.9FLTYY47 pKa = 7.93PHH49 pKa = 7.15CSLTKK54 pKa = 10.57EE55 pKa = 4.09EE56 pKa = 4.94ALSQIQALDD65 pKa = 3.39TPTNKK70 pKa = 9.87KK71 pKa = 9.82FIKK74 pKa = 9.65ICRR77 pKa = 11.84EE78 pKa = 3.71LHH80 pKa = 6.25EE81 pKa = 5.87DD82 pKa = 4.22GSPHH86 pKa = 6.11LHH88 pKa = 6.16VLIQFEE94 pKa = 4.46GKK96 pKa = 9.71YY97 pKa = 9.46RR98 pKa = 11.84CQNQRR103 pKa = 11.84FFDD106 pKa = 4.04LVSPTRR112 pKa = 11.84SAHH115 pKa = 4.86FHH117 pKa = 6.55PNIQGAKK124 pKa = 9.25SSSDD128 pKa = 3.11VKK130 pKa = 11.17SYY132 pKa = 11.26LEE134 pKa = 4.04KK135 pKa = 11.17DD136 pKa = 3.12GDD138 pKa = 3.87TLEE141 pKa = 4.12WGEE144 pKa = 3.84FQIDD148 pKa = 3.21GRR150 pKa = 11.84SARR153 pKa = 11.84GGQQSANDD161 pKa = 3.81AYY163 pKa = 10.71AAALNAGSKK172 pKa = 10.29SEE174 pKa = 3.84ALRR177 pKa = 11.84VIKK180 pKa = 10.21EE181 pKa = 4.18LAPKK185 pKa = 10.3DD186 pKa = 3.74YY187 pKa = 11.2VLQFHH192 pKa = 6.76NLNANLDD199 pKa = 4.29RR200 pKa = 11.84IFTPPVEE207 pKa = 4.62VYY209 pKa = 10.26VSPFSSSSFDD219 pKa = 3.41QVPEE223 pKa = 3.92EE224 pKa = 4.34LEE226 pKa = 3.73VWAAEE231 pKa = 4.11NVMDD235 pKa = 5.48AAARR239 pKa = 11.84PLRR242 pKa = 11.84PKK244 pKa = 10.58SIVIEE249 pKa = 4.33GDD251 pKa = 3.1SRR253 pKa = 11.84TGKK256 pKa = 8.52TMWARR261 pKa = 11.84SLGPHH266 pKa = 6.71NYY268 pKa = 10.18LCGHH272 pKa = 7.38LDD274 pKa = 4.18LSPKK278 pKa = 10.02VYY280 pKa = 10.89SNEE283 pKa = 3.02AWYY286 pKa = 10.82NVIDD290 pKa = 5.29DD291 pKa = 4.41VDD293 pKa = 3.61PHH295 pKa = 5.85YY296 pKa = 11.0LKK298 pKa = 10.7HH299 pKa = 6.2FKK301 pKa = 10.7EE302 pKa = 4.46FMGAQRR308 pKa = 11.84DD309 pKa = 3.81WQSNTKK315 pKa = 9.6YY316 pKa = 10.57GKK318 pKa = 9.12PVQIKK323 pKa = 10.41GGIPTIFLCNPGPNSSYY340 pKa = 11.34KK341 pKa = 10.62EE342 pKa = 3.85FLDD345 pKa = 3.82EE346 pKa = 4.66EE347 pKa = 4.61KK348 pKa = 11.18NSALKK353 pKa = 10.53NWALKK358 pKa = 10.24NAIFVTLEE366 pKa = 3.94GPLYY370 pKa = 10.17PGSNQSAAQASQEE383 pKa = 3.81GDD385 pKa = 3.32QASTCC390 pKa = 3.84

Molecular weight: 43.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B7ZER4|B7ZER4_9GEMI Replication enhancer OS=Pedilanthus leaf curl virus [Pakistan:Multan:2004] OX=587313 GN=REn PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.87IIISTPASKK16 pKa = 10.3VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 2.99SPYY27 pKa = 10.47ASRR30 pKa = 11.84AAAPIVRR37 pKa = 11.84VTKK40 pKa = 10.52ARR42 pKa = 11.84AWANRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.87PRR54 pKa = 11.84MYY56 pKa = 10.68RR57 pKa = 11.84MYY59 pKa = 10.44RR60 pKa = 11.84SPDD63 pKa = 3.21VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.1SRR80 pKa = 11.84HH81 pKa = 6.13DD82 pKa = 3.26IQHH85 pKa = 6.35IGKK88 pKa = 8.97VMCVSDD94 pKa = 3.5VTRR97 pKa = 11.84GIGLTHH103 pKa = 6.67RR104 pKa = 11.84VGKK107 pKa = 9.66RR108 pKa = 11.84FCVKK112 pKa = 9.94SVYY115 pKa = 10.52VLGKK119 pKa = 9.41IWMDD123 pKa = 3.35EE124 pKa = 4.04NIKK127 pKa = 9.32TKK129 pKa = 10.6NHH131 pKa = 5.78TNSVMFFLVRR141 pKa = 11.84DD142 pKa = 3.84RR143 pKa = 11.84RR144 pKa = 11.84PVDD147 pKa = 3.13KK148 pKa = 10.28PQDD151 pKa = 3.56FGEE154 pKa = 4.33VFNMFDD160 pKa = 4.29NEE162 pKa = 4.11PSTATVKK169 pKa = 10.38NVHH172 pKa = 6.5RR173 pKa = 11.84DD174 pKa = 3.15RR175 pKa = 11.84YY176 pKa = 8.77QVLRR180 pKa = 11.84KK181 pKa = 9.41WYY183 pKa = 8.08ATVTGGQYY191 pKa = 10.85ASKK194 pKa = 10.24EE195 pKa = 3.73QALVKK200 pKa = 10.65KK201 pKa = 9.58FIRR204 pKa = 11.84VNNYY208 pKa = 7.74VVYY211 pKa = 9.96NQQEE215 pKa = 3.8AGKK218 pKa = 10.1YY219 pKa = 8.23EE220 pKa = 4.02NHH222 pKa = 6.47TEE224 pKa = 3.99NALMLYY230 pKa = 7.52MACTHH235 pKa = 7.06ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.67FYY251 pKa = 11.26DD252 pKa = 3.51SVSNN256 pKa = 3.9

Molecular weight: 29.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1148

100

390

191.3

21.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.272 ± 0.739

2.265 ± 0.586

4.617 ± 0.419

4.791 ± 0.523

4.355 ± 0.388

5.226 ± 0.331

3.92 ± 0.759

5.401 ± 0.882

5.575 ± 0.651

6.969 ± 0.851

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.178 ± 0.455

5.314 ± 0.728

5.923 ± 0.463

5.314 ± 0.559

6.707 ± 1.167

8.362 ± 1.03

5.488 ± 0.57

6.359 ± 1.032

1.394 ± 0.239

3.571 ± 0.621
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski