Capybara microvirus Cap1_SP_76

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7K6|A0A4P8W7K6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_76 OX=2584790 PE=4 SV=1
MM1 pKa = 7.01EE2 pKa = 4.34TVFDD6 pKa = 3.96KK7 pKa = 11.35LKK9 pKa = 10.56DD10 pKa = 3.19IRR12 pKa = 11.84LPEE15 pKa = 3.86EE16 pKa = 4.42RR17 pKa = 11.84EE18 pKa = 3.73ASEE21 pKa = 3.74YY22 pKa = 10.89DD23 pKa = 3.37INIMVAKK30 pKa = 10.1GVRR33 pKa = 11.84GDD35 pKa = 3.43NGIAEE40 pKa = 4.19DD41 pKa = 4.17QYY43 pKa = 12.18NGITDD48 pKa = 3.29VSRR51 pKa = 11.84ILGLVTDD58 pKa = 5.08NFQAMDD64 pKa = 3.48SLAYY68 pKa = 9.4INRR71 pKa = 11.84YY72 pKa = 8.49GKK74 pKa = 10.16AAEE77 pKa = 4.28AQQQQSS83 pKa = 3.13

Molecular weight: 9.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7K6|A0A4P8W7K6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_76 OX=2584790 PE=4 SV=1
MM1 pKa = 8.09IEE3 pKa = 4.94DD4 pKa = 4.05IEE6 pKa = 4.6SLGDD10 pKa = 3.18QSMQYY15 pKa = 9.59FQKK18 pKa = 10.24KK19 pKa = 8.92ANYY22 pKa = 8.29RR23 pKa = 11.84ASKK26 pKa = 8.29TKK28 pKa = 10.42SVVGGVLSAVASAIASIFATPAAGAAVGAGASGAIAASLASVAGASGVVTAAAEE82 pKa = 4.12KK83 pKa = 10.25GASISANAVKK93 pKa = 10.29AATAFDD99 pKa = 3.98KK100 pKa = 10.99VDD102 pKa = 4.11KK103 pKa = 10.87IRR105 pKa = 11.84TAVGNPRR112 pKa = 11.84QWISNGIARR121 pKa = 11.84GILNSNRR128 pKa = 11.84GLLTAAGNYY137 pKa = 6.7TMRR140 pKa = 11.84SATQASMDD148 pKa = 3.79AVGKK152 pKa = 10.57AILNIPKK159 pKa = 10.43LGGLL163 pKa = 3.79

Molecular weight: 16.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1638

83

514

273.0

30.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.341 ± 2.3

1.038 ± 0.488

6.227 ± 0.638

4.518 ± 0.727

5.311 ± 0.905

5.983 ± 0.937

2.015 ± 0.513

5.433 ± 0.84

5.067 ± 0.736

9.341 ± 0.951

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.503 ± 0.555

4.701 ± 0.588

3.968 ± 0.954

5.556 ± 0.503

5.433 ± 0.911

8.547 ± 0.955

4.884 ± 0.427

5.189 ± 0.601

0.916 ± 0.154

4.029 ± 0.422
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski